[gentoo-commits] repo/gentoo:master commit in: dev-python/numpy/

["Michał Górny" <mgorny@gentoo.org>]

commit:     fc02066c8f2a8758ccc590c1e7d7ed228dc5ca8c
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sun Nov 20 06:19:12 2022 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sun Nov 20 07:44:58 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fc02066c

dev-python/numpy: Bump to 1.23.5

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/numpy/Manifest            |   4 +
 dev-python/numpy/numpy-1.23.5.ebuild | 187 +++++++++++++++++++++++++++++++++++
 2 files changed, 191 insertions(+)

diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest
index becb2629a429..4ff26f7aa647 100644
--- a/dev-python/numpy/Manifest
+++ b/dev-python/numpy/Manifest
@@ -1,12 +1,16 @@
 DIST numpy-1.22.4.zip 11458830 BLAKE2B c999a42119e8d71942e4df4802ea22eef6c1ab65e11ad1f8364dd811c3df0eae1c7499055e76b523dc011bc9574f4060e17ecc3ea8bd35f5247fa17e3e188364 SHA512 bb2993459157c43f8c419de98be1c832f108b4eb6b96e1d20f406eccd782681ad8d0f8653637962ac592abe7d75719c17678ec97f035f6c87d4c7f939a1a8a48
 DIST numpy-1.23.3.tar.gz 10726039 BLAKE2B 4b6d38fc0363ea89f173a0cd65368b7c154b45f7f661098378f7ef31208008d5ff17ae58eab72bed921d166d630a4eca3441fc3097cd41a4a945b8f8180375cc SHA512 e690ea2906c91e567df2c801fbfe41652dabd37208faa99d6e068bda423dcc9f88be013478e9b6c1a339c36ef4c44b07a067d44e4e9c4b2e4f1344cbcb0598a9
 DIST numpy-1.23.4.tar.gz 10728765 BLAKE2B bbac44cc8a09a36537e25f90833c2ad7d1e4025e7d3eebd3c73ae2f12f1109520b58d2a779324f542aa1f2787f8b6c50ea907eb5ab7b7b84ebe3f3342c3d8a09 SHA512 727ca8950b0fbd5670e939b1c9c5cea852781ec4254d56a1659a91dc0430fc10b01ffdd16e1bb28a62319f91029e087024f4c6298bfc859a6050bfb507edcff8
+DIST numpy-1.23.5.tar.gz 10731755 BLAKE2B d2ed6d359a51343a1618f64604e4d5c030115caa63f2aadf2fc150775630e40fbebaad28f5657faae1365264fd45bc9efb00854bf9cd393b7628c96d6fc87db9 SHA512 8f3ece76dbe79bc887275332d25f851ade2087de3026de5fb7ed793590b3e7d274f590357296e152373b4e9a245d4d563393ba7198bca6d44631b941acb89c2c
 DIST numpy-html-1.22.4.zip 23724824 BLAKE2B 44ea3da0a703a024a629c8413dfffaf760458b185d19452da0e7e23c819e19833291e10ebd07bdda794077574b8852a368036dda8335c2753cd481740497502a SHA512 4077d9974bfd7f2c189025c3740350652e6f8e0b5727fbc9711a1c0118c1e4ecc281d4876baf1c6a5dc802d20178d6b04a2922f14e9c321cd3b68228b1e295c3
 DIST numpy-html-1.23.3.zip 27964271 BLAKE2B 0aa26d7c39f2d6b119e404dfb9642967770881ee0d640157a9ed11d16f21cd43109bed3c08f89fda457ec470292d945e2bf8b2dab56e4b36192d5e8eb3757b44 SHA512 218a2e893816af767c7cedd1f2256e05f68e59491c29277c95de653a206aaff35c5fe3bc6afd6d6d5ea7957748ec565593eb30d004e36e94c894ea4a6884902a
 DIST numpy-html-1.23.4.zip 27964271 BLAKE2B 0aa26d7c39f2d6b119e404dfb9642967770881ee0d640157a9ed11d16f21cd43109bed3c08f89fda457ec470292d945e2bf8b2dab56e4b36192d5e8eb3757b44 SHA512 218a2e893816af767c7cedd1f2256e05f68e59491c29277c95de653a206aaff35c5fe3bc6afd6d6d5ea7957748ec565593eb30d004e36e94c894ea4a6884902a
+DIST numpy-html-1.23.5.zip 27964271 BLAKE2B 0aa26d7c39f2d6b119e404dfb9642967770881ee0d640157a9ed11d16f21cd43109bed3c08f89fda457ec470292d945e2bf8b2dab56e4b36192d5e8eb3757b44 SHA512 218a2e893816af767c7cedd1f2256e05f68e59491c29277c95de653a206aaff35c5fe3bc6afd6d6d5ea7957748ec565593eb30d004e36e94c894ea4a6884902a
 DIST numpy-ref-1.22.4.pdf 7537013 BLAKE2B 702398fddde349901f9303f4788a3ae3cc4bb78b4d310e169fcc6193fd62b33947c89ede45ba9aaea55e74f6a6abc755d3d94428adce9a8163678c6718aec2da SHA512 c1617817f94ccdfe2bbdebdc9c6869beefa1369d5ab0897c1573d8fb5cb3de153f90d5588aae84a0f498fba57ad6bc5c0c5c2c3aefb119e2913e4ddf007cc8e1
 DIST numpy-ref-1.23.3.pdf 7715485 BLAKE2B 7fbb0ce29e86fc7cd4932a6a9f0221b579b6cae695231edfebf863e5b4c2920796d802ccf9ae3e05b331964ac7c4f51099578d91b6b7fb357c6de2110a5f7cba SHA512 6036c6a36f332b83f371c7530a6ba6f354b1334d667d2a52993a1e52aa9d94d524e216f768928a006c717ed4b4131879f6e491a294ecfd3a0d1b0f9f937a887a
 DIST numpy-ref-1.23.4.pdf 7715485 BLAKE2B 7fbb0ce29e86fc7cd4932a6a9f0221b579b6cae695231edfebf863e5b4c2920796d802ccf9ae3e05b331964ac7c4f51099578d91b6b7fb357c6de2110a5f7cba SHA512 6036c6a36f332b83f371c7530a6ba6f354b1334d667d2a52993a1e52aa9d94d524e216f768928a006c717ed4b4131879f6e491a294ecfd3a0d1b0f9f937a887a
+DIST numpy-ref-1.23.5.pdf 7715485 BLAKE2B 7fbb0ce29e86fc7cd4932a6a9f0221b579b6cae695231edfebf863e5b4c2920796d802ccf9ae3e05b331964ac7c4f51099578d91b6b7fb357c6de2110a5f7cba SHA512 6036c6a36f332b83f371c7530a6ba6f354b1334d667d2a52993a1e52aa9d94d524e216f768928a006c717ed4b4131879f6e491a294ecfd3a0d1b0f9f937a887a
 DIST numpy-user-1.22.4.pdf 3978348 BLAKE2B 87cc73cb1c406446eb9d86ea6cbaeac6ba13c7d2b2ffd47524483af1698c3efdfaafe61e987624c5ce01939494861413b271e9a96f49abbbe69d634b9be55c95 SHA512 8e04c0c90255038471de6ef0f8f4ed9e356d646b028bb16f667f3c59170eddaa0d86d48226462c5c17b8123b2a28a09982764979e9e76658b4e26cd0a976f3a1
 DIST numpy-user-1.23.3.pdf 4123384 BLAKE2B d4587c9f979e1ef4734768598d6e106f2b4b0c8222f901a6c4caf0920e41622201252c5bd172b16346e0357138b5ff27c59e56c851be5ae3b7712624bd9cc5b4 SHA512 58e1ab96d2cfbd96df205c86f0a1a09e204349f70d21df7f8481c21ded8b46f4b9ede3216d5cce6c2b9bfc0aacbecdfa198bdb2d4c258a0dd4acb6e3ba421f9c
 DIST numpy-user-1.23.4.pdf 4123384 BLAKE2B d4587c9f979e1ef4734768598d6e106f2b4b0c8222f901a6c4caf0920e41622201252c5bd172b16346e0357138b5ff27c59e56c851be5ae3b7712624bd9cc5b4 SHA512 58e1ab96d2cfbd96df205c86f0a1a09e204349f70d21df7f8481c21ded8b46f4b9ede3216d5cce6c2b9bfc0aacbecdfa198bdb2d4c258a0dd4acb6e3ba421f9c
+DIST numpy-user-1.23.5.pdf 4123384 BLAKE2B d4587c9f979e1ef4734768598d6e106f2b4b0c8222f901a6c4caf0920e41622201252c5bd172b16346e0357138b5ff27c59e56c851be5ae3b7712624bd9cc5b4 SHA512 58e1ab96d2cfbd96df205c86f0a1a09e204349f70d21df7f8481c21ded8b46f4b9ede3216d5cce6c2b9bfc0aacbecdfa198bdb2d4c258a0dd4acb6e3ba421f9c

diff --git a/dev-python/numpy/numpy-1.23.5.ebuild b/dev-python/numpy/numpy-1.23.5.ebuild
new file mode 100644
index 000000000000..18d0a7787bc5
--- /dev/null
+++ b/dev-python/numpy/numpy-1.23.5.ebuild
@@ -0,0 +1,187 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..11} )
+PYTHON_REQ_USE="threads(+)"
+
+FORTRAN_NEEDED=lapack
+
+inherit distutils-r1 flag-o-matic fortran-2 toolchain-funcs
+
+DOC_PV=${PV}
+# For when docs aren't ready yet, set to last version
+#DOC_PV=1.23.0
+DESCRIPTION="Fast array and numerical python library"
+HOMEPAGE="
+	https://numpy.org/
+	https://github.com/numpy/numpy/
+	https://pypi.org/project/numpy/
+"
+SRC_URI="
+	mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
+	doc? (
+		https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-html.zip -> numpy-html-${DOC_PV}.zip
+		https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-ref.pdf -> numpy-ref-${DOC_PV}.pdf
+		https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-user.pdf -> numpy-user-${DOC_PV}.pdf
+	)
+"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~loong ~m68k ~mips ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~sparc-solaris ~x64-solaris ~x86-solaris"
+IUSE="doc lapack"
+
+RDEPEND="
+	lapack? (
+		>=virtual/cblas-3.8
+		>=virtual/lapack-3.8
+	)
+"
+BDEPEND="
+	${RDEPEND}
+	>=dev-python/cython-0.29.30[${PYTHON_USEDEP}]
+	lapack? (
+		virtual/pkgconfig
+	)
+	doc? (
+		app-arch/unzip
+	)
+	test? (
+		>=dev-python/hypothesis-5.8.0[${PYTHON_USEDEP}]
+		>=dev-python/pytz-2019.3[${PYTHON_USEDEP}]
+		>=dev-python/cffi-1.14.0[${PYTHON_USEDEP}]
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/numpy-1.22.0-no-hardcode-blasv2.patch
+)
+
+distutils_enable_tests pytest
+
+src_unpack() {
+	default
+	if use doc; then
+		unzip -qo "${DISTDIR}"/numpy-html-${DOC_PV}.zip -d html || die
+	fi
+}
+
+python_prepare_all() {
+	# Allow use with setuptools 60.x
+	# See numpy-1.22.1-revert-setuptools-upper-bound.patch for details
+	export SETUPTOOLS_USE_DISTUTILS=stdlib
+
+	if use lapack; then
+		local incdir="${EPREFIX}"/usr/include
+		local libdir="${EPREFIX}"/usr/$(get_libdir)
+		cat >> site.cfg <<-EOF || die
+			[blas]
+			include_dirs = ${incdir}
+			library_dirs = ${libdir}
+			blas_libs = cblas,blas
+			[lapack]
+			library_dirs = ${libdir}
+			lapack_libs = lapack
+		EOF
+	else
+		export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None
+	fi
+
+	export CC="$(tc-getCC) ${CFLAGS}"
+
+	append-flags -fno-strict-aliasing
+
+	# See progress in http://projects.scipy.org/scipy/numpy/ticket/573
+	# with the subtle difference that we don't want to break Darwin where
+	# -shared is not a valid linker argument
+	if [[ ${CHOST} != *-darwin* ]]; then
+		append-ldflags -shared
+	fi
+
+	# only one fortran to link with:
+	# linking with cblas and lapack library will force
+	# autodetecting and linking to all available fortran compilers
+	append-fflags -fPIC
+	if use lapack; then
+		NUMPY_FCONFIG="config_fc --noopt --noarch"
+		# workaround bug 335908
+		[[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95"
+	fi
+
+	# don't version f2py, we will handle it.
+	sed -i -e '/f2py_exe/s: + os\.path.*$::' numpy/f2py/setup.py || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	export MAKEOPTS=-j1 #660754
+
+	distutils-r1_python_compile ${NUMPY_FCONFIG}
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# very disk- and memory-hungry
+		numpy/lib/tests/test_io.py::test_large_zip
+
+		# precision problems
+		numpy/core/tests/test_umath_accuracy.py::TestAccuracy::test_validate_transcendentals
+
+		# runs the whole test suite recursively, that's just crazy
+		numpy/core/tests/test_mem_policy.py::test_new_policy
+
+		# very slow, unlikely to be practically useful
+		numpy/typing/tests/test_typing.py
+	)
+
+	if use arm && [[ $(uname -m || echo "unknown") == "armv8l" ]] ; then
+		# Degenerate case. arm32 chroot on arm64.
+		# bug #774108
+		EPYTEST_DESELECT+=(
+			numpy/core/tests/test_cpu_features.py::Test_ARM_Features::test_features
+		)
+	fi
+
+	if use x86 ; then
+		EPYTEST_DESELECT+=(
+			# https://github.com/numpy/numpy/issues/18388
+			numpy/core/tests/test_umath.py::TestRemainder::test_float_remainder_overflow
+			# https://github.com/numpy/numpy/issues/18387
+			numpy/random/tests/test_generator_mt19937.py::TestRandomDist::test_pareto
+			# more precision problems
+			numpy/core/tests/test_einsum.py::TestEinsum::test_einsum_sums_int16
+		)
+	fi
+	if use arm || use x86 ; then
+		EPYTEST_DESELECT+=(
+			# too large for 32-bit platforms
+			numpy/core/tests/test_ufunc.py::TestUfunc::test_identityless_reduction_huge_array
+		)
+	fi
+
+	distutils_install_for_testing --single-version-externally-managed \
+		--record "${TMPDIR}/record.txt" ${NUMPY_FCONFIG}
+
+	cd "${TEST_DIR}/lib" || die
+	epytest -k "not _fuzz"
+}
+
+python_install() {
+	# https://github.com/numpy/numpy/issues/16005
+	local mydistutilsargs=( build_src )
+	distutils-r1_python_install ${NUMPY_FCONFIG}
+	python_optimize
+}
+
+python_install_all() {
+	local DOCS=( LICENSE.txt README.md THANKS.txt )
+
+	if use doc; then
+		local HTML_DOCS=( "${WORKDIR}"/html/. )
+		DOCS+=( "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf )
+	fi
+
+	distutils-r1_python_install_all
+}