[gentoo-commits] repo/gentoo:master commit in: dev-haskell/biocore/files/, dev-haskell/biocore/, profiles/

[gentoo-commits] repo/gentoo:master commit in: dev-haskell/biocore/files/, dev-haskell/biocore/, profiles/

[Jakov Smolić]

commit:     6b2e70aa907b43ebaadfccc0cb910370f97438fe
Author:     Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Mon Aug 22 07:58:27 2022 +0000
Commit:     Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Mon Aug 22 08:03:29 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6b2e70aa

dev-haskell/biocore: treeclean

Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>

 dev-haskell/biocore/Manifest                       |  1 -
 dev-haskell/biocore/biocore-0.3.1.ebuild           | 29 ----------------------
 .../biocore/files/biocore-0.3.1-ghc84.patch        | 28 ---------------------
 dev-haskell/biocore/metadata.xml                   | 14 -----------
 profiles/package.mask                              |  1 -
 5 files changed, 73 deletions(-)

diff --git a/dev-haskell/biocore/Manifest b/dev-haskell/biocore/Manifest
deleted file mode 100644
index 301a0ddeebdc..000000000000
--- a/dev-haskell/biocore/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST biocore-0.3.1.tar.gz 2812 BLAKE2B ff94cbbb37c7f74c7d08e31a626336d4db621c468dd42df43ba20739224378b1ecd358e74111174eea6a30450e50091245490606da39781d92e905cb1e875db6 SHA512 0a9a3690aa0888c688c8429facd0a26ac94f639222568d2e68a0640714098a40fa38d196800900486d12b36ee735576519d98e4d45f0320261d3f5de9ab09311

diff --git a/dev-haskell/biocore/biocore-0.3.1.ebuild b/dev-haskell/biocore/biocore-0.3.1.ebuild
deleted file mode 100644
index 41e81668702e..000000000000
--- a/dev-haskell/biocore/biocore-0.3.1.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-# ebuild generated by hackport 0.3.3.9999
-
-CABAL_FEATURES="lib profile haddock hoogle hscolour"
-inherit haskell-cabal
-
-DESCRIPTION="A bioinformatics library"
-HOMEPAGE="https://hackage.haskell.org/package/biocore"
-SRC_URI="https://hackage.haskell.org/package/${P}/${P}.tar.gz"
-
-LICENSE="LGPL-2.1"
-SLOT="0/${PV}"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="dev-haskell/stringable:=[profile?]
-	>=dev-lang/ghc-6.10.4:=
-"
-DEPEND="${RDEPEND}
-	>=dev-haskell/cabal-1.6.0.3
-"
-
-PATCHES=(
-	"${FILESDIR}"/${P}-ghc84.patch
-)

diff --git a/dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch b/dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch
deleted file mode 100644
index b0a404eb8b46..000000000000
--- a/dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch
+++ /dev/null
@@ -1,28 +0,0 @@
---- a/src/Bio/Core/Sequence.hs
-+++ b/src/Bio/Core/Sequence.hs
-@@ -37,2 +37,3 @@ import Data.Stringable hiding (length)
- import Data.Monoid
-+import qualified Data.Semigroup as S
- 
-@@ -42,2 +43,5 @@ newtype SeqData  = SeqData { unSD :: LC.ByteString }
- 
-+instance S.Semigroup SeqData where
-+  (<>) (SeqData s1) (SeqData s2) = SeqData (mappend s1 s2)
-+
- instance Monoid SeqData where
-@@ -51,2 +55,9 @@ newtype SeqLabel = SeqLabel { unSL :: LC.ByteString }
- 
-+instance S.Semigroup SeqLabel where
-+  (<>) (SeqLabel s1) (SeqLabel s2) = let
-+    (i1:r1) = LC.words s1
-+    (i2:r2) = LC.words s2
-+    sid = mconcat [i1,(LC.pack ":"),i2]
-+    in SeqLabel (LC.unwords ([sid]++r1++[LC.pack ":"]++r2))
-+
- instance Monoid SeqLabel where
-@@ -68,2 +79,5 @@ newtype QualData = QualData { unQD :: L.ByteString }
- 
-+instance S.Semigroup QualData where
-+  (<>) (QualData s1) (QualData s2) = QualData (mappend s1 s2)
-+
- instance Monoid QualData where

diff --git a/dev-haskell/biocore/metadata.xml b/dev-haskell/biocore/metadata.xml
deleted file mode 100644
index 6fe4dd9247b7..000000000000
--- a/dev-haskell/biocore/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>haskell@gentoo.org</email>
-		<name>Gentoo Haskell</name>
-	</maintainer>
-	<longdescription>
-		A set of core definitions and data structures
-		commonly used in bioinformatics.  The intention is that bioinformatics
-		libraries will use this as a common ground to avoid needless incompatibilities
-		and duplicated work.
-	</longdescription>
-</pkgmetadata>

diff --git a/profiles/package.mask b/profiles/package.mask
index 85a0a6689a5d..41576708a5b8 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -346,7 +346,6 @@ dev-haskell/base-noprelude
 dev-haskell/basic-prelude
 dev-haskell/binary-instances
 dev-haskell/binary-tagged
-dev-haskell/biocore
 
 # Hans de Graaff <graaff@gentoo.org> (2022-07-16)
 # No longer supported upstream. Use a newer ruby version instead.