[gentoo-commits] repo/gentoo:master commit in: sci-biology/trnascan-se/, sci-biology/trnascan-se/files/

["David Seifert" <soap@gentoo.org>]

commit:     01ccd8f6eb167dedd81a5ba3a3282f9e36893c4b
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Jul  9 09:53:58 2022 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Jul  9 09:53:58 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=01ccd8f6

sci-biology/trnascan-se: drop 1.31

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 .../files/trnascan-se-1.31-ldflags.patch           | 26 -----------
 sci-biology/trnascan-se/trnascan-se-1.31.ebuild    | 54 ----------------------
 2 files changed, 80 deletions(-)

diff --git a/sci-biology/trnascan-se/files/trnascan-se-1.31-ldflags.patch b/sci-biology/trnascan-se/files/trnascan-se-1.31-ldflags.patch
deleted file mode 100644
index f28b1e8f6bb0..000000000000
--- a/sci-biology/trnascan-se/files/trnascan-se-1.31-ldflags.patch
+++ /dev/null
@@ -1,26 +0,0 @@
-diff --git a/Makefile b/Makefile
-index 53e5c5b..a2d3feb 100644
---- a/Makefile
-+++ b/Makefile
-@@ -109,17 +109,17 @@ MPOBJ = mpviterbi.o mp-dbviterbi.o
- all: 	$(PROGS) tRNAscan-SE setpaths
- 
- covels-SE:  $(OBJ) scan_main.o
--	$(CC) $(CFLAGS) $(RFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS)
-+	$(CC) $(CFLAGS) $(RFLAGS) $(LDFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS)
- 
- coves-SE: $(OBJ) score_main.o
--	$(CC) $(CFLAGS) $(RFLAGS) -o coves-SE score_main.o $(OBJ) $(LIBS)
-+	$(CC) $(CFLAGS) $(RFLAGS) $(LDFLAGS) -o coves-SE score_main.o $(OBJ) $(LIBS)
- 
- eufindtRNA: $(SQUIDOBJ) pavesi.o eufind_main.o
--	$(CC) $(CFLAGS)  -o eufindtRNA eufind_main.o \
-+	$(CC) $(CFLAGS)  $(LDFLAGS) -o eufindtRNA eufind_main.o \
- 	pavesi.o $(SQUIDOBJ) $(LIBS)
- 
- trnascan-1.4: trnascan.o
--	$(CC) $(CFLAGS) -DTSCANDIR=\"$(LIBDIR)\" -o trnascan-1.4 trnascan.c
-+	$(CC) $(CFLAGS) -DTSCANDIR=\"$(LIBDIR)\" $(LDFLAGS) -o trnascan-1.4 trnascan.c
- 
- tRNAscan-SE:
- 	$(PERLDIR)/$(PERLBIN) checkversion.pl

diff --git a/sci-biology/trnascan-se/trnascan-se-1.31.ebuild b/sci-biology/trnascan-se/trnascan-se-1.31.ebuild
deleted file mode 100644
index cd8dc152d6d2..000000000000
--- a/sci-biology/trnascan-se/trnascan-se-1.31.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit perl-functions toolchain-funcs
-
-DESCRIPTION="tRNA detection in large-scale genome sequences"
-HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
-SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE=""
-
-S="${WORKDIR}"/tRNAscan-SE-1.3.1/
-
-PATCHES=(
-	"${FILESDIR}"/${P}-ldflags.patch
-)
-
-src_prepare() {
-	default
-	sed \
-		-e "s:BINDIR  = \$(HOME)/bin:BINDIR = ${EPREFIX}/usr/bin:" \
-		-e "s:LIBDIR  = \$(HOME)/lib/tRNAscan-SE:LIBDIR = ${EPRFIX}/usr/share/${PN}:" \
-		-e "s:MANDIR  = \$(HOME)/man:MANDIR = ${EPREFIX}/usr/share/man:" \
-		-e "s:CC = gcc:CC = $(tc-getCC):" \
-		-e "s:CFLAGS = -O:CFLAGS = ${CFLAGS}:" \
-		-i Makefile || die
-
-	perl_set_version
-}
-
-src_test() {
-	emake PATH="${S}:${PATH}" testrun
-}
-
-src_install() {
-	dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4
-
-	newman tRNAscan-SE.man tRNAscan-SE.man.1
-
-	dodoc MANUAL README Release.history
-
-	insinto /usr/share/${PN}/
-	doins *.cm gcode.* Dsignal TPCsignal
-
-	dodoc Manual.ps
-
-	insinto ${VENDOR_LIB}
-	doins -r tRNAscanSE
-}