[gentoo-commits] repo/gentoo:master commit in: sci-biology/yass/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/yass/

[David Seifert]

commit:     4a567c8fd34191f0fd1752e8da2a07143b5b7d85
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Sep  3 22:35:56 2016 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Sep  3 23:03:18 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4a567c8f

sci-biology/yass: remove deprecated EAPI ebuilds

Package-Manager: portage-2.3.0

 sci-biology/yass/yass-1.14-r1.ebuild | 36 ------------------------------------
 sci-biology/yass/yass-1.14.ebuild    | 22 ----------------------
 2 files changed, 58 deletions(-)

diff --git a/sci-biology/yass/yass-1.14-r1.ebuild b/sci-biology/yass/yass-1.14-r1.ebuild
deleted file mode 100644
index 6476a83..00000000
--- a/sci-biology/yass/yass-1.14-r1.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-inherit autotools eutils
-
-DESCRIPTION="Genomic similarity search with multiple transition constrained spaced seeds"
-HOMEPAGE="http://bioinfo.lifl.fr/yass/"
-SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE="dmalloc lowmem threads"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="dmalloc? ( dev-libs/dmalloc )"
-RDEPEND="${DEPEND}"
-
-src_prepare() {
-	epatch "${FILESDIR}"/${PV}-as-needed.patch
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		$(use_enable threads) \
-		$(use_enable lowmem lowmemory) \
-		$(use_with dmalloc)
-}
-
-src_install() {
-	emake DESTDIR="${D}" install || die
-	dodoc AUTHORS README NEWS || die
-}

diff --git a/sci-biology/yass/yass-1.14.ebuild b/sci-biology/yass/yass-1.14.ebuild
deleted file mode 100644
index c0d6242..00000000
--- a/sci-biology/yass/yass-1.14.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-DESCRIPTION="Genomic similarity search with multiple transition constrained spaced seeds"
-HOMEPAGE="http://bioinfo.lifl.fr/yass/"
-SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND=""
-
-src_install() {
-	einstall || die
-	dodoc AUTHORS README NEWS
-}

[gentoo-commits] repo/gentoo:master commit in: sci-biology/yass/

[David Seifert]

commit:     49f9e4a0c388e395c0cbf781ea7e3a9db8cc761b
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Sep  3 22:33:38 2016 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Sep  3 23:03:13 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=49f9e4a0

sci-biology/yass: Port to EAPI=6

Package-Manager: portage-2.3.0

 sci-biology/yass/yass-1.14-r2.ebuild | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/sci-biology/yass/yass-1.14-r2.ebuild b/sci-biology/yass/yass-1.14-r2.ebuild
new file mode 100644
index 00000000..ff95e74
--- /dev/null
+++ b/sci-biology/yass/yass-1.14-r2.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools
+
+DESCRIPTION="Genomic similarity search with multiple transition constrained spaced seeds"
+HOMEPAGE="http://bioinfo.lifl.fr/yass/"
+SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="dmalloc lowmem threads"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="dmalloc? ( dev-libs/dmalloc )"
+RDEPEND="${DEPEND}"
+
+PATCHES=( "${FILESDIR}"/${PV}-as-needed.patch )
+
+src_prepare() {
+	default
+	eautoreconf
+}
+
+src_configure() {
+	econf \
+		$(use_enable threads) \
+		$(use_enable lowmem lowmemory) \
+		$(use_with dmalloc)
+}

[gentoo-commits] repo/gentoo:master commit in: sci-biology/yass/

[David Seifert]

commit:     be4181e663d6cd69f74b30e67f6735a653889dcd
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Jul  7 19:57:15 2022 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Jul  7 19:57:15 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=be4181e6

sci-biology/yass: update EAPI 6 -> 8

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/yass/{yass-1.14-r2.ebuild => yass-1.14-r3.ebuild} | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-biology/yass/yass-1.14-r2.ebuild b/sci-biology/yass/yass-1.14-r3.ebuild
similarity index 92%
rename from sci-biology/yass/yass-1.14-r2.ebuild
rename to sci-biology/yass/yass-1.14-r3.ebuild
index cdbe54f0bef6..3913c44f4580 100644
--- a/sci-biology/yass/yass-1.14-r2.ebuild
+++ b/sci-biology/yass/yass-1.14-r3.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=8
 
 inherit autotools
 
@@ -11,8 +11,8 @@ SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz"
 
 LICENSE="GPL-2"
 SLOT="0"
-IUSE="dmalloc lowmem threads"
 KEYWORDS="~amd64 ~x86"
+IUSE="dmalloc lowmem threads"
 
 DEPEND="dmalloc? ( dev-libs/dmalloc )"
 RDEPEND="${DEPEND}"