[gentoo-commits] repo/gentoo:master commit in: sci-biology/primer3/, sci-biology/primer3/files/

["David Seifert" <soap@gentoo.org>]

commit:     a6ac5b96c3fb9bd7f096d432522a77ab24d7f30a
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jun 19 18:04:30 2022 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jun 19 18:04:30 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a6ac5b96

sci-biology/primer3: update EAPI 6 -> 8

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 ...ystem.patch => primer3-2.3.7-buildsystem.patch} | 69 +++++++++++++++-------
 ...rimer3-2.3.7.ebuild => primer3-2.3.7-r1.ebuild} | 15 +++--
 2 files changed, 54 insertions(+), 30 deletions(-)

diff --git a/sci-biology/primer3/files/primer3-2.3.4-buildsystem.patch b/sci-biology/primer3/files/primer3-2.3.7-buildsystem.patch
similarity index 83%
rename from sci-biology/primer3/files/primer3-2.3.4-buildsystem.patch
rename to sci-biology/primer3/files/primer3-2.3.7-buildsystem.patch
index cf47b35af502..8f9bf4042758 100644
--- a/sci-biology/primer3/files/primer3-2.3.4-buildsystem.patch
+++ b/sci-biology/primer3/files/primer3-2.3.7-buildsystem.patch
@@ -1,11 +1,6 @@
- src/Makefile | 61 ++++++++++++++++++++++++++++++------------------------------
- 1 file changed, 31 insertions(+), 30 deletions(-)
-
-diff --git a/src/Makefile b/src/Makefile
-index 607ab45..a88adf4 100644
 --- a/src/Makefile
 +++ b/src/Makefile
-@@ -52,15 +52,16 @@ TESTOPTS=
+@@ -52,15 +52,13 @@
  WINMAKE=mingw32-make
  
  LDLIBS     = -lm
@@ -15,56 +10,66 @@ index 607ab45..a88adf4 100644
 -O_OPTS     = -O2
 -CC_OPTS    = -g -Wall -D__USE_FIXED_PROTOTYPES__
 -P_DEFINES  =
-+AR         ?= ar
-+CC         ?= gcc
-+CXX        ?= g++
+-
+-CFLAGS  = $(CC_OPTS) $(O_OPTS)
+-LDFLAGS = -g
 +O_OPTS     ?= 
 +CC_OPTS    ?= -Wall -D__USE_FIXED_PROTOTYPES__
 +P_DEFINES  ?=
- 
--CFLAGS  = $(CC_OPTS) $(O_OPTS)
--LDFLAGS = -g
++
 +CFLAGS    += $(CC_OPTS) $(O_OPTS)
 +CXXFLAGS  += $(CC_OPTS) $(O_OPTS)
 +LDFLAGS   +=
  # Note, for profiling, use
  # make O_OPTS='-pg -O0' LDFLAGS='-g -pg'
  
-@@ -92,7 +93,7 @@ LIBPRIMER3      = libprimer3.a
+@@ -92,7 +90,6 @@
  LIBPRIMER3_DYN  = libprimer3.so.1.0.0
  LIBRARIES       = $(LIBPRIMER3) $(LIBDPAL) $(LIBTHAL) $(LIBOLIGOTM) 
  DYNLIBS         = $(LIBPRIMER3_DYN) $(LIBDPAL_DYN) $(LIBTHAL_DYN) $(LIBOLIGOTM_DYN)
 -RANLIB          = ranlib
-+RANLIB          ?= ranlib
  
  PRIMER_OBJECTS1=primer3_boulder_main.o\
                  format_output.o\
-@@ -127,85 +128,85 @@ $(LIBOLIGOTM): oligotm.o
- 	$(RANLIB) $@
+@@ -119,93 +116,89 @@
+ ifeq ($(TESTOPTS),--windows)
+ 	cd ..\test & $(WINMAKE) clean TESTOPTS=$(TESTOPTS)
+ else
+-	cd ../test/; make clean
++	cd ../test/ && $(MAKE) clean
+ endif
+ 
+ $(LIBOLIGOTM): oligotm.o
+-	$(AR) rv $@ oligotm.o
+-	$(RANLIB) $@
++	$(AR) rcs $@ oligotm.o
  
  $(LIBOLIGOTM_LIB): oligotm.o
 -	$(CC) -shared -W1,-soname,liboligotm.so.1 -o $(LIBOLIGOTM_DYN) oligotm.o
 +	$(CC) $(LDFLAGS) -shared -W1,-soname,liboligotm.so.1 -o $(LIBOLIGOTM_DYN) oligotm.o
  
  $(LIBDPAL): dpal_primer.o
- 	$(AR) rv $@ dpal_primer.o
- 	$(RANLIB) $@
+-	$(AR) rv $@ dpal_primer.o
+-	$(RANLIB) $@
++	$(AR) rcs $@ dpal_primer.o
  
  $(LIBDPAL_DYN): dpal_primer.o
 -	$(CC) -shared -W1,-soname,libdpal.so.1 -o $(LIBDPAL_DYN_LIB) dpal_primer.o
 +	$(CC) $(LDFLAGS) -shared -W1,-soname,libdpal.so.1 -o $(LIBDPAL_DYN_LIB) dpal_primer.o
  
  $(LIBTHAL): thal_primer.o
- 	$(AR) rv $@ thal_primer.o
- 	$(RANLIB) $@
+-	$(AR) rv $@ thal_primer.o
+-	$(RANLIB) $@
++	$(AR) rcs $@ thal_primer.o
  
  $(LIBTHAL_DYN): thal_primer.o
 -	$(CC) -shared -W1,-soname,libthal.so.1 -o $(LIBTHAL_DYN_LIB) thal_primer.o
 +	$(CC) $(LDFLAGS) -shared -W1,-soname,libthal.so.1 -o $(LIBTHAL_DYN_LIB) thal_primer.o
  
  $(LIBPRIMER3): libprimer3.o p3_seq_lib.o
- 	$(AR) rv $@ libprimer3.o p3_seq_lib.o
- 	$(RANLIB) $@
+-	$(AR) rv $@ libprimer3.o p3_seq_lib.o
+-	$(RANLIB) $@
++	$(AR) rcs $@ libprimer3.o p3_seq_lib.o
  
  $(LIBPRIMER3_DYN): libprimer3.o p3_seq_lib.o
 -	$(CC) -shared -W1,-soname,liprimer3.so.1 -o $(LIBPRIMER3_DYN) libprimer3.o p3_seq_lib.o
@@ -146,3 +151,23 @@ index 607ab45..a88adf4 100644
  
  primer_test: test
  
+@@ -213,7 +206,7 @@
+ ifeq ($(TESTOPTS),--windows)
+ 	cd ..\test & $(WINMAKE) TESTOPTS=$(TESTOPTS)
+ else
+-	cd ../test; make test
++	cd ../test && $(MAKE) test
+ endif
+ 
+ # ======================================================================
+--- a/test/Makefile
++++ b/test/Makefile
+@@ -86,7 +86,7 @@
+ ifeq ($(TESTOPTS),--windows)
+ 	cd ..\src & $(WINMAKE)
+ else
+-	cd ../src; make
++	cd ../src && $(MAKE)
+ endif
+ 
+ clean:

diff --git a/sci-biology/primer3/primer3-2.3.7.ebuild b/sci-biology/primer3/primer3-2.3.7-r1.ebuild
similarity index 77%
rename from sci-biology/primer3/primer3-2.3.7.ebuild
rename to sci-biology/primer3/primer3-2.3.7-r1.ebuild
index 4c6c9ce7bf44..b36e9291db94 100644
--- a/sci-biology/primer3/primer3-2.3.7.ebuild
+++ b/sci-biology/primer3/primer3-2.3.7-r1.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=8
 
 inherit toolchain-funcs
 
@@ -13,12 +13,11 @@ LICENSE="GPL-2"
 SLOT="0"
 KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
 
-DEPEND="dev-lang/perl"
-RDEPEND=""
+BDEPEND="dev-lang/perl"
 
 PATCHES=(
-	"${FILESDIR}"/${PN}-2.3.4-buildsystem.patch
-	"${FILESDIR}"/${PN}-2.3.7-gcc7.patch
+	"${FILESDIR}"/${P}-buildsystem.patch
+	"${FILESDIR}"/${P}-gcc7.patch
 )
 
 src_prepare() {
@@ -29,7 +28,7 @@ src_prepare() {
 }
 
 src_configure() {
-	tc-export CC CXX AR RANLIB
+	tc-export AR CC CXX
 }
 
 src_compile() {
@@ -38,7 +37,7 @@ src_compile() {
 
 src_test() {
 	emake -C test | tee "${T}"/test.log
-	grep -q "\[FAILED\]" && die "test failed. See "${T}"/test.log"
+	grep -q "\[FAILED\]" && die "test failed. See ${T}/test.log"
 }
 
 src_install() {