From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id C443D158091 for ; Sun, 19 Jun 2022 08:09:18 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id BDF7BE0993; Sun, 19 Jun 2022 08:09:17 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 9FF39E0993 for ; Sun, 19 Jun 2022 08:09:17 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 87EA734194E for ; Sun, 19 Jun 2022 08:09:16 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 9A0C1510 for ; Sun, 19 Jun 2022 08:09:13 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1655626125.d4b7f179a733bc6f4bc223a20f9f40825d920aa2.soap@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/samtools/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/samtools/Manifest sci-biology/samtools/samtools-1.13.ebuild sci-biology/samtools/samtools-1.15.ebuild X-VCS-Directories: sci-biology/samtools/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: d4b7f179a733bc6f4bc223a20f9f40825d920aa2 X-VCS-Branch: master Date: Sun, 19 Jun 2022 08:09:13 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 6c2bf077-44bb-465a-a8f0-64de4aa62b5b X-Archives-Hash: 75e65f178a8b10d1eb7ff0bff39762c2 commit: d4b7f179a733bc6f4bc223a20f9f40825d920aa2 Author: David Seifert gentoo org> AuthorDate: Sun Jun 19 08:08:45 2022 +0000 Commit: David Seifert gentoo org> CommitDate: Sun Jun 19 08:08:45 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d4b7f179 sci-biology/samtools: drop 1.13, 1.15 Signed-off-by: David Seifert gentoo.org> sci-biology/samtools/Manifest | 2 -- sci-biology/samtools/samtools-1.13.ebuild | 47 ------------------------------- sci-biology/samtools/samtools-1.15.ebuild | 47 ------------------------------- 3 files changed, 96 deletions(-) diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index a605c469e6ea..0ff07e0d4f83 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,4 +1,2 @@ DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e0c9f25013ed0d039bfe8ef61108600d917f8c9d356e98aca632795b4eb0f01ea1b54526a652577fb74a38a433c2 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5 -DIST samtools-1.13.tar.bz2 7984998 BLAKE2B e46161c43d4ea51c3ef1d9ed74c40c21b70aef80aa903a49b94b3d468f9211e9147281204eb61b9843c071f09ead08c924e3d624d4df76a1d02ba9ceb318399a SHA512 647fbad2935dfc3e4f85da257a6ee59af40078024a3b77f117dada5f55846e381a096db3cf62a63c04ae95dfc9fadb1d515b8d618e6388bc93f0b2ac85eaf6ea DIST samtools-1.15.1.tar.bz2 7831692 BLAKE2B 0fe94ff05075b219c77d0da8500c64bdffd53927950b5a67f8708c5c326ebc90a40c193b3bcf0baf3d09baed6fa596d9d024cb529340c6887de88614c9ff4bd6 SHA512 54a8a394b6b5231bd942236ec353027caaf48b4552a00b35573a1e71d680320d8140a73409bb76066c82e86fe62cf74f2f8f2f1a1e4aec96e4e8b9aff0d44a46 -DIST samtools-1.15.tar.bz2 7832423 BLAKE2B 5bdfaec750faaa8d84eb601e75f513d726724d3f2f882d9e16edfe4802bd1ad8fee5f1208c93f450fff37125998cb50ff2247fce514d94e580d5d292555da930 SHA512 21ce4aff90514a393e685cbb6fa7833c88010b18846be0190d49e8da70995252c2e17b5108113d2313a752706618041c74680efc9ed5539b97ebc0589cb6c6e7 diff --git a/sci-biology/samtools/samtools-1.13.ebuild b/sci-biology/samtools/samtools-1.13.ebuild deleted file mode 100644 index 3165c7b7381c..000000000000 --- a/sci-biology/samtools/samtools-1.13.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" - -RDEPEND=" - dev-lang/perl - =sci-libs/htslib-${PV}*:= - sys-libs/ncurses:=[unicode(+)] - sys-libs/zlib" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -src_prepare() { - default - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --with-ncurses \ - --with-htslib=system \ - CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)" -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples -} diff --git a/sci-biology/samtools/samtools-1.15.ebuild b/sci-biology/samtools/samtools-1.15.ebuild deleted file mode 100644 index 74aee5acaaa2..000000000000 --- a/sci-biology/samtools/samtools-1.15.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" - -RDEPEND=" - dev-lang/perl - =sci-libs/htslib-${PV}*:= - sys-libs/ncurses:=[unicode(+)] - sys-libs/zlib" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -src_prepare() { - default - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --with-ncurses \ - --with-htslib=system \ - CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)" -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples -}