[gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/

["Anna Vyalkova" <cyber+gentoo@sysrq.in>]

commit:     af0420fb5d5d6d99e31e9f0b8ff9f37033167c60
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Thu Jun  2 04:00:28 2022 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Thu Jun  2 04:54:15 2022 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=af0420fb

sci-biology/cmdock: fix CPU flags detection

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 .../{cmdock-0.1.4.ebuild => cmdock-0.1.4-r1.ebuild}       |  8 +++++---
 sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch | 15 +++++++++++++++
 sci-biology/cmdock/metadata.xml                           |  2 +-
 3 files changed, 21 insertions(+), 4 deletions(-)

diff --git a/sci-biology/cmdock/cmdock-0.1.4.ebuild b/sci-biology/cmdock/cmdock-0.1.4-r1.ebuild
similarity index 90%
rename from sci-biology/cmdock/cmdock-0.1.4.ebuild
rename to sci-biology/cmdock/cmdock-0.1.4-r1.ebuild
index 70befcfcc..cf79531ec 100644
--- a/sci-biology/cmdock/cmdock-0.1.4.ebuild
+++ b/sci-biology/cmdock/cmdock-0.1.4-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 2021 Gentoo Authors
+# Copyright 2021-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{8..10} pypy3 )
+PYTHON_COMPAT=( python3_{8..11} pypy3 )
 
 BOINC_APP_OPTIONAL="true"
 
@@ -14,7 +14,7 @@ DOCS_DIR="docs"
 inherit python-any-r1 boinc-app docs flag-o-matic meson
 
 DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
-HOMEPAGE="https://gitlab.com/Jukic/cmdock https://www.rxdock.org"
+HOMEPAGE="https://gitlab.com/Jukic/cmdock"
 SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz"
 S="${WORKDIR}/${PN}-v${PV}"
 
@@ -35,6 +35,8 @@ BDEPEND="
 	doc? ( app-doc/doxygen )
 "
 
+PATCHES=( "${FILESDIR}"/cmdock-0.1.4-fix-detection.patch )
+
 DOCS=( INSTALL.md README.md )
 
 BOINC_MASTER_URL="https://www.sidock.si/sidock/"

diff --git a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch b/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
new file mode 100644
index 000000000..fceae1e5c
--- /dev/null
+++ b/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
@@ -0,0 +1,15 @@
+--- a/meson.build
++++ b/meson.build
+@@ -79,8 +79,10 @@
+ 
+ cpp_compiler = meson.get_compiler('cpp')
+ 
+-extended_encoders_available = (cpp_compiler.has_header('emmintrin.h') and
+-    host_machine.cpu_family() == 'x86' and host_machine.cpu_family() == 'x86_64')
++extended_encoders_available = (
++    cpp_compiler.has_header('emmintrin.h') and
++    (host_machine.cpu_family() == 'x86' or host_machine.cpu_family() == 'x86_64')
++)
+ 
+ if not extended_encoders_available
+   add_project_arguments('-DBUNDLE_NO_SSE', language: 'cpp')

diff --git a/sci-biology/cmdock/metadata.xml b/sci-biology/cmdock/metadata.xml
index beddf8090..3f0fcb55e 100644
--- a/sci-biology/cmdock/metadata.xml
+++ b/sci-biology/cmdock/metadata.xml
@@ -4,7 +4,7 @@
 	<upstream>
 		<remote-id type="gitlab">Jukic/cmdock</remote-id>
 		<bugs-to>https://gitlab.com/Jukic/cmdock/-/issues</bugs-to>
-		<doc>https://www.rxdock.org/documentation/devel/html</doc>
+		<doc>https://rxdock.gitlab.io/documentation/devel/html/</doc>
 	</upstream>
 	<maintainer type="person">
 		<email>cyber+gentoo@sysrq.in</email>