From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 26CB915808B for ; Sun, 3 Apr 2022 10:35:21 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 9F2A3E08F4; Sun, 3 Apr 2022 10:35:17 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 90619E08F0 for ; Sun, 3 Apr 2022 10:35:16 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 2B9E0340FD2 for ; Sun, 3 Apr 2022 10:35:15 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 712C0373 for ; Sun, 3 Apr 2022 10:35:13 +0000 (UTC) From: "Michał Górny" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Michał Górny" Message-ID: <1648982110.badb95ac5f82a3f0b3fe0c302e4cbe02d9e01c83.mgorny@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/ X-VCS-Repository: repo/gentoo X-VCS-Files: dev-python/pandas/Manifest dev-python/pandas/pandas-1.4.2.ebuild X-VCS-Directories: dev-python/pandas/ X-VCS-Committer: mgorny X-VCS-Committer-Name: Michał Górny X-VCS-Revision: badb95ac5f82a3f0b3fe0c302e4cbe02d9e01c83 X-VCS-Branch: master Date: Sun, 3 Apr 2022 10:35:13 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 4953f4f3-50ac-4ab7-93d2-a280d65399d9 X-Archives-Hash: 5ccefa75ed4f11595800783470c5b25e commit: badb95ac5f82a3f0b3fe0c302e4cbe02d9e01c83 Author: Michał Górny gentoo org> AuthorDate: Sun Apr 3 08:17:26 2022 +0000 Commit: Michał Górny gentoo org> CommitDate: Sun Apr 3 10:35:10 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=badb95ac dev-python/pandas: Bump to 1.4.2 Signed-off-by: Michał Górny gentoo.org> dev-python/pandas/Manifest | 1 + dev-python/pandas/pandas-1.4.2.ebuild | 201 ++++++++++++++++++++++++++++++++++ 2 files changed, 202 insertions(+) diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest index d7a58f4e67ea..b67f711eedc7 100644 --- a/dev-python/pandas/Manifest +++ b/dev-python/pandas/Manifest @@ -1 +1,2 @@ DIST pandas-1.4.1.tar.gz 4941369 BLAKE2B ce85253b32c3be6baad74e2bca98d24b43f42c311ffad128615b711e461a76067035e238cf1693eed12d4ca8e354aef56f711e45cd934a4af6222f4727838b1e SHA512 2d8ba8f3152b5bd5495e406ce21d896342ef77473ed3c0207f77b6503c3f4353bbeb5ec573696eb6748e65e956d9d1b97d314a136104151ecb5ba822afa72422 +DIST pandas-1.4.2.tar.gz 4940242 BLAKE2B b44c9e46458b4e2919b2d215c8678601ef0976118197172ddc74fa712cf07b02cdb09b79940e90bf6907a45e7e3c63615292f7141a4fb8ed4ae22a36decd1e39 SHA512 6406241e30e9ed386610dd90bbb7407cfe3e94ff20c8fd1241aa75288894666f06e59f7c74b5f916080a3745254ba22ec9dad1195f040b613639b5712aced571 diff --git a/dev-python/pandas/pandas-1.4.2.ebuild b/dev-python/pandas/pandas-1.4.2.ebuild new file mode 100644 index 000000000000..4e3961affad0 --- /dev/null +++ b/dev-python/pandas/pandas-1.4.2.ebuild @@ -0,0 +1,201 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{8..10} ) +PYTHON_REQ_USE="threads(+)" + +VIRTUALX_REQUIRED="manual" + +inherit distutils-r1 multiprocessing optfeature virtualx + +DESCRIPTION="Powerful data structures for data analysis and statistics" +HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/" +SRC_URI=" + https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz +" +S="${WORKDIR}/${P/_/}" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86" +IUSE="doc full-support minimal test X" +RESTRICT="!test? ( test )" + +RECOMMENDED_DEPEND=" + >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}] + >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}] +" + +# TODO: add pandas-gbq to the tree +OPTIONAL_DEPEND=" + dev-python/beautifulsoup4[${PYTHON_USEDEP}] + dev-python/blosc[${PYTHON_USEDEP}] + || ( + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + ) + dev-python/jinja[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + || ( + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + ) + >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}] + >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}] + >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}] + >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}] + >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}] + !hppa? ( + dev-python/statsmodels[${PYTHON_USEDEP}] + >=dev-python/scipy-1.1[${PYTHON_USEDEP}] + ) + X? ( + || ( + dev-python/PyQt5[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) + ) +" +COMMON_DEPEND=" + >=dev-python/numpy-1.21.0[${PYTHON_USEDEP}] + >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}] + >=dev-python/pytz-2020.1[${PYTHON_USEDEP}] +" +DEPEND=" + ${COMMON_DEPEND} + >=dev-python/cython-0.29.24[${PYTHON_USEDEP}] + doc? ( + ${VIRTUALX_DEPEND} + app-text/pandoc + dev-python/beautifulsoup4[${PYTHON_USEDEP}] + dev-python/html5lib[${PYTHON_USEDEP}] + dev-python/ipython[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/nbsphinx[${PYTHON_USEDEP}] + >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}] + >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}] + >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}] + dev-python/pytz[${PYTHON_USEDEP}] + dev-python/rpy[${PYTHON_USEDEP}] + dev-python/sphinx[${PYTHON_USEDEP}] + dev-python/xlrd[${PYTHON_USEDEP}] + dev-python/xlwt[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + x11-misc/xclip + ) + test? ( + ${VIRTUALX_DEPEND} + ${RECOMMENDED_DEPEND} + ${OPTIONAL_DEPEND} + dev-python/beautifulsoup4[${PYTHON_USEDEP}] + >=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}] + dev-python/openpyxl[${PYTHON_USEDEP}] + dev-python/pymysql[${PYTHON_USEDEP}] + >=dev-python/pytest-6[${PYTHON_USEDEP}] + >=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}] + dev-python/psycopg:2[${PYTHON_USEDEP}] + dev-python/xlsxwriter[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) +" +# dev-python/statsmodels invokes a circular dep +# hence rm from doc? ( ), again +RDEPEND=" + ${COMMON_DEPEND} + !minimal? ( ${RECOMMENDED_DEPEND} ) + full-support? ( ${OPTIONAL_DEPEND} ) +" + +python_prepare_all() { + local PATCHES=( + # https://github.com/pandas-dev/pandas/issues/44980 + "${FILESDIR}"/pandas-1.4.0-distutils-hack-assertion.patch + ) + + # Prevent un-needed download during build + sed -e "/^ 'sphinx.ext.intersphinx',/d" \ + -i doc/source/conf.py || die + + # requires package installed + sed -e '/extra_compile_args =/s:"-Werror"::' \ + -i setup.py || die + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile -j1 +} + +python_compile_all() { + # To build docs the need be located in $BUILD_DIR, + # else PYTHONPATH points to unusable modules. + if use doc; then + cd "${BUILD_DIR}"/lib || die + cp -ar "${S}"/doc . && cd doc || die + LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html + fi +} + +src_test() { + virtx distutils-r1_src_test +} + +python_test() { + local EPYTEST_DESELECT=( + # test for rounding errors, fails if we have better precision + # e.g. on amd64 with FMA or on arm64 + # https://github.com/pandas-dev/pandas/issues/38921 + pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues + + # TODO + pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated + pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct + + # TODO: these require a running db server + pandas/tests/io/test_sql.py::TestMySQLAlchemy + pandas/tests/io/test_sql.py::TestMySQLAlchemyConn + pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy + pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn + ) + + local -x LC_ALL=C.UTF-8 + cd "${BUILD_DIR}/install$(python_get_sitedir)" || die + "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die + epytest pandas --skip-slow --skip-network -m "not single" \ + -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" || + die "Tests failed with ${EPYTHON}" +} + +python_install_all() { + if use doc; then + dodoc -r "${BUILD_DIR}"/lib/doc/build/html + einfo "An initial build of docs is absent of references to statsmodels" + einfo "due to circular dependency. To have them included, emerge" + einfo "statsmodels next and re-emerge pandas with USE doc" + fi + + distutils-r1_python_install_all +} + +pkg_postinst() { + optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck + optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" + optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml + optfeature "for msgpack compression using blosc" dev-python/blosc + optfeature "Template engine for conditional HTML formatting" dev-python/jinja + optfeature "Plotting support" dev-python/matplotlib + optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt + optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1" + optfeature "R I/O support" dev-python/rpy + optfeature "Needed for parts of pandas.stats" dev-python/statsmodels + optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0" + optfeature "miscellaneous statistical functions" dev-python/scipy + optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel +}