[gentoo-commits] repo/gentoo:master commit in: sci-biology/glimmer/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/glimmer/

[Aaron Bauman]

commit:     e8739e59b6b6a408b72794f8e8c1428b002eaa2c
Author:     Michael Mair-Keimberger <m.mairkeimberger <AT> gmail <DOT> com>
AuthorDate: Mon May 21 10:18:38 2018 +0000
Commit:     Aaron Bauman <bman <AT> gentoo <DOT> org>
CommitDate: Mon May 21 17:02:32 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e8739e59

sci-biology/glimmer: use HTTPs

 sci-biology/glimmer/glimmer-3.02-r3.ebuild | 4 ++--
 sci-biology/glimmer/glimmer-3.02b.ebuild   | 6 +++---
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/sci-biology/glimmer/glimmer-3.02-r3.ebuild b/sci-biology/glimmer/glimmer-3.02-r3.ebuild
index 992a6d327fc..9a32e3dbf89 100644
--- a/sci-biology/glimmer/glimmer-3.02-r3.ebuild
+++ b/sci-biology/glimmer/glimmer-3.02-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI="5"
@@ -8,7 +8,7 @@ inherit eutils toolchain-funcs
 MY_PV=${PV//./}
 
 DESCRIPTION="An HMM-based microbial gene finding system from TIGR"
-HOMEPAGE="http://www.cbcb.umd.edu/software/glimmer/"
+HOMEPAGE="https://ccb.jhu.edu/software/glimmer/index.shtml"
 SRC_URI="http://www.cbcb.umd.edu/software/${PN}/${PN}${MY_PV}.tar.gz"
 
 LICENSE="Artistic"

diff --git a/sci-biology/glimmer/glimmer-3.02b.ebuild b/sci-biology/glimmer/glimmer-3.02b.ebuild
index 9653024a1de..4318b60ff94 100644
--- a/sci-biology/glimmer/glimmer-3.02b.ebuild
+++ b/sci-biology/glimmer/glimmer-3.02b.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI="5"
@@ -8,8 +8,8 @@ inherit eutils toolchain-funcs
 MY_PV=${PV//./}
 
 DESCRIPTION="An HMM-based microbial gene finding system from TIGR"
-HOMEPAGE="http://ccb.jhu.edu/software/glimmer"
-SRC_URI="http://ccb.jhu.edu/software/${PN}/${PN}${MY_PV}.tar.gz"
+HOMEPAGE="https://ccb.jhu.edu/software/glimmer/index.shtml"
+SRC_URI="https://ccb.jhu.edu/software/${PN}/${PN}${MY_PV}.tar.gz"
 
 LICENSE="Artistic"
 SLOT="0"

[gentoo-commits] repo/gentoo:master commit in: sci-biology/glimmer/

[Sam James]

commit:     94cbce6f250b841d2f94e62b1b44a37a50958090
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 20 18:49:31 2022 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sun Mar 20 18:50:53 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=94cbce6f

sci-biology/glimmer: [QA] fix tc-get* quoting

This can cause build problems for e.g. 32-bit (gcc -m32 ...)

Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-biology/glimmer/glimmer-3.02b.ebuild | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-biology/glimmer/glimmer-3.02b.ebuild b/sci-biology/glimmer/glimmer-3.02b.ebuild
index c9332c5143a1..35bea17dd8ab 100644
--- a/sci-biology/glimmer/glimmer-3.02b.ebuild
+++ b/sci-biology/glimmer/glimmer-3.02b.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -46,9 +46,9 @@ src_prepare() {
 src_compile() {
 	emake \
 		-C src \
-		CC=$(tc-getCC) \
-		CXX=$(tc-getCXX) \
-		AR=$(tc-getAR) \
+		CC="$(tc-getCC)" \
+		CXX="$(tc-getCXX)" \
+		AR="$(tc-getAR)" \
 		CXXFLAGS="${CXXFLAGS}" \
 		CFLAGS="${CFLAGS}" \
 		LDFLAGS="${LDFLAGS}"