From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id D633415808B for ; Mon, 21 Feb 2022 16:20:12 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id E3768E0863; Mon, 21 Feb 2022 16:20:11 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id CAA04E0863 for ; Mon, 21 Feb 2022 16:20:11 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 2976734303C for ; Mon, 21 Feb 2022 16:20:10 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 5A794D0 for ; Mon, 21 Feb 2022 16:20:05 +0000 (UTC) From: "Alexey Shvetsov" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Alexey Shvetsov" Message-ID: <1645460400.e62617ffb1b60e2a916b7a92659df2606374d62a.alexxy@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/gromacs/, sci-chemistry/gromacs/files/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild X-VCS-Directories: sci-chemistry/gromacs/ sci-chemistry/gromacs/files/ X-VCS-Committer: alexxy X-VCS-Committer-Name: Alexey Shvetsov X-VCS-Revision: e62617ffb1b60e2a916b7a92659df2606374d62a X-VCS-Branch: master Date: Mon, 21 Feb 2022 16:20:05 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 023557e1-294f-441b-8d01-d68e75781363 X-Archives-Hash: f00059dcfed97356fc4041744f920017 commit: e62617ffb1b60e2a916b7a92659df2606374d62a Author: Alexey Shvetsov gentoo org> AuthorDate: Mon Feb 21 16:19:40 2022 +0000 Commit: Alexey Shvetsov gentoo org> CommitDate: Mon Feb 21 16:20:00 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e62617ff sci-chemistry/gromacs: Fix musl build (missing int64_t) for 2022 Closes: https://bugs.gentoo.org/833599 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov gentoo.org> .../gromacs/files/gromacs-2022-musl-stdint.patch | 25 ++++++++++++++++++++++ ...22_rc1-r1.ebuild => gromacs-2022_rc1-r2.ebuild} | 2 ++ 2 files changed, 27 insertions(+) diff --git a/sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch b/sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch new file mode 100644 index 000000000000..cae6fff93ae3 --- /dev/null +++ b/sci-chemistry/gromacs/files/gromacs-2022-musl-stdint.patch @@ -0,0 +1,25 @@ +From 694994a9d8ad989e7c5d61b7759024a7b10ce3b7 Mon Sep 17 00:00:00 2001 +From: Paul Bauer +Date: Mon, 21 Feb 2022 09:53:46 +0100 +Subject: [PATCH 1/6] Fix missing includes for musl libc + +Fixes #4404 +--- + api/legacy/include/gromacs/math/vectypes.h | 1 + + 1 file changed, 1 insertion(+) + +diff --git a/api/legacy/include/gromacs/math/vectypes.h b/api/legacy/include/gromacs/math/vectypes.h +index b818f5f8f8..7c5457e05d 100644 +--- a/api/legacy/include/gromacs/math/vectypes.h ++++ b/api/legacy/include/gromacs/math/vectypes.h +@@ -36,6 +36,7 @@ + + #include + #include ++#include + + #include + #include +-- +2.35.1 + diff --git a/sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild b/sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild similarity index 99% rename from sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild rename to sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild index f12ac52a719f..b0d42eda5cb0 100644 --- a/sci-chemistry/gromacs/gromacs-2022_rc1-r1.ebuild +++ b/sci-chemistry/gromacs/gromacs-2022_rc1-r2.ebuild @@ -82,6 +82,8 @@ DOCS=( AUTHORS README ) RESTRICT="!test? ( test )" +PATCHES=( "${FILESDIR}/${PN}-2022-musl-stdint.patch" ) + if [[ ${PV} != *9999 ]]; then S="${WORKDIR}/${PN}-${PV/_/-}" fi