[gentoo-commits] repo/gentoo:master commit in: profiles/, sci-biology/repeatmasker/

[gentoo-commits] repo/gentoo:master commit in: profiles/, sci-biology/repeatmasker/

[Jakov Smolić]

commit:     c00ae3c8eaa7a79e7b376d45f8868d757c98d310
Author:     Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Thu Feb 10 09:16:56 2022 +0000
Commit:     Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Thu Feb 10 09:17:35 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c00ae3c8

sci-biology/repeatmasker: treeclean

Closes: https://bugs.gentoo.org/828701
Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>

 profiles/package.mask                              |  6 ---
 sci-biology/repeatmasker/Manifest                  |  1 -
 sci-biology/repeatmasker/metadata.xml              |  8 ---
 sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild | 58 ----------------------
 4 files changed, 73 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 559052986b0f..adc2a2b4b9ce 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -251,12 +251,6 @@ dev-python/intreehooks
 # Removal on 2022-02-12. Bug #828703.
 sci-chemistry/povscript+
 
-# Jakov Smolić <jsmolic@gentoo.org> (2022-01-12)
-# Outdated, using EAPI 5, multiple open bugs, compile
-# and test failures. No other major distro is packaging this.
-# Removal on 2022-02-11. Bug #828706. Bug #828701.
-sci-biology/repeatmasker
-
 # Brian Evans <grknight@gentoo.org> (2022-01-07)
 # The main consumer, phpunit, does not initiate the new timer correctly
 # This is likely to cause issues in tests; Unmask if using for other purposes

diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest
deleted file mode 100644
index afba36fe4e6d..000000000000
--- a/sci-biology/repeatmasker/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST RepeatMasker-open-4-0-1.tar.gz 84077910 BLAKE2B 45598d46ef1c0e1233ed5ce10c2d29e4b2ef1a6843846970df2d0f997a22657eeed7dd7c851418d6f751468b22327b47f3b72105fdcfa56bbebe97395946ab37 SHA512 6b710a02b2964bca6acb25cc918bd56f7caba7b80b3b683972f0584180bf0fd3704f657d7ee341187a4ac86d9883e62eb4f09da237fa8ef1b481137d1a89963e

diff --git a/sci-biology/repeatmasker/metadata.xml b/sci-biology/repeatmasker/metadata.xml
deleted file mode 100644
index ccdff086e20b..000000000000
--- a/sci-biology/repeatmasker/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-biology@gentoo.org</email>
-    <name>Gentoo Biology Project</name>
-  </maintainer>
-</pkgmetadata>

diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild b/sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild
deleted file mode 100644
index bf6097df1f68..000000000000
--- a/sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-MY_PV=${PV//\./-}
-
-DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
-HOMEPAGE="http://repeatmasker.org/"
-SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
-
-LICENSE="OSL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="
-	sci-biology/rmblast
-	sci-biology/trf
-	sci-biology/repeatmasker-libraries"
-
-S="${WORKDIR}/RepeatMasker"
-
-src_configure() {
-	sed -i -e 's/system( "clear" );//' \
-		-e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|' "${S}/configure" || die
-	echo "
-env
-/usr/share/${PN}
-/usr/bin
-2
-/opt/rmblast/bin
-Y
-5" | "${S}/configure" || die "configure failed"
-	sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' \
-		-e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' \
-		-e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' \
-		"${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
-}
-
-src_install() {
-	exeinto /usr/share/${PN}
-	for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do
-		doexe $i
-		dosym /usr/share/${PN}/$i /usr/bin/$i
-	done
-
-	dodir /usr/share/${PN}/lib
-	insinto /usr/share/${PN}/lib
-	doins "${S}"/*.pm
-
-	insinto /usr/share/${PN}
-	doins -r util Matrices Libraries taxonomy.dat *.help
-	keepdir /usr/share/${PN}/Libraries
-
-	dodoc README INSTALL *.help
-}