From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 5D979158087 for ; Wed, 26 Jan 2022 10:17:37 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id AB35D2BC00B; Wed, 26 Jan 2022 10:17:36 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 22C0B2BC00B for ; Wed, 26 Jan 2022 10:17:36 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 1B5CF34318B for ; Wed, 26 Jan 2022 10:17:35 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id A2B54D0 for ; Wed, 26 Jan 2022 10:17:33 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1643191369.d703c5a43cf46b3e7228f8beaeb66b7bba525638.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bambus/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/bambus/bambus-2.33-r1.ebuild sci-biology/bambus/bambus-2.33-r2.ebuild X-VCS-Directories: sci-biology/bambus/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: d703c5a43cf46b3e7228f8beaeb66b7bba525638 X-VCS-Branch: master Date: Wed, 26 Jan 2022 10:17:33 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: a9125561-2ee2-4f15-ba5f-57ffc044d765 X-Archives-Hash: 77eb98fd3705567cfeda0d133fd4fd44 commit: d703c5a43cf46b3e7228f8beaeb66b7bba525638 Author: Andrew Ammerlaan gentoo org> AuthorDate: Wed Jan 26 10:02:49 2022 +0000 Commit: Andrew Ammerlaan gentoo org> CommitDate: Wed Jan 26 10:02:49 2022 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d703c5a4 sci-biology/bambus: fix PMS violation Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan gentoo.org> sci-biology/bambus/{bambus-2.33-r1.ebuild => bambus-2.33-r2.ebuild} | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/sci-biology/bambus/bambus-2.33-r1.ebuild b/sci-biology/bambus/bambus-2.33-r2.ebuild similarity index 98% rename from sci-biology/bambus/bambus-2.33-r1.ebuild rename to sci-biology/bambus/bambus-2.33-r2.ebuild index 1e2078c94..475c7f0b1 100644 --- a/sci-biology/bambus/bambus-2.33-r1.ebuild +++ b/sci-biology/bambus/bambus-2.33-r2.ebuild @@ -66,11 +66,12 @@ src_prepare() { einfo "bambus-2.33/src/TIGR_Foundation_CC/OptionResult.cc:/*! Uses same syntax as getopt" #rm -rf src/TIGR_Foundation_CC || die "Failed to rm -rf src/TIGR_Foundation_CC/, we use it from sci-biology/tigr-foundation-libs" #sed -i 's:TIGR_Foundation_CC::' src/Makefile || die "Failed to zap last pointer to local copy of tigr-foundation-libs" - cd src/TIGR_Foundation_CC || die "Failed to cd src/TIGR_Foundation_CC/" - sed -e "s:/export/usr/local:${ED}/usr:g" -i Makefile || die } src_install() { + pushd src/TIGR_Foundation_CC || die + sed -e "s:/export/usr/local:${ED}/usr:g" -i Makefile || die + popd || die emake DESTDIR="${ED}/usr" install # cvs HEAD of amos now contains even more updated files: /usr/bin/printScaff /usr/bin/untangle /usr/lib/TIGR/AsmLib.pm for f in FASTArecord.pm FASTAreader.pm Foundation.pm FASTAgrammar.pm AsmLib.pm; do rm "${ED}"/usr/lib/TIGR/$f; done || die