[gentoo-commits] proj/sci:master commit in: sci-biology/OBO-Edit/files/, sci-biology/OBO-Edit/

["Andrew Ammerlaan" <andrewammerlaan@gentoo.org>]

commit:     7885a590926759db288d422f38d3b907397dde47
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jan 25 14:27:11 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 25 14:27:11 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=7885a590

sci-biology/OBO-Edit: drop dead package

last update 2016

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild  | 73 -----------------------------
 sci-biology/OBO-Edit/files/response.varfile | 10 ----
 sci-biology/OBO-Edit/metadata.xml           | 15 ------
 3 files changed, 98 deletions(-)

diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
deleted file mode 100644
index 321d3901c..000000000
--- a/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
+++ /dev/null
@@ -1,73 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit java-pkg-2
-
-MY_PV="${PV//./_}"
-
-DESCRIPTION="Java-based editor optimized for the OBO biological ontology file format"
-HOMEPAGE="http://www.oboedit.org/" # no https, invalid certificate
-SRC_URI="https://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20${PV}/oboedit_${MY_PV}_unix_install4j.sh -> ${PN}_unix_install4j-${PV}.sh"
-
-LICENSE="OBO-Edit" # Artistic-like
-SLOT="0"
-KEYWORDS=""
-
-DEPEND="app-arch/rpm2targz"
-RDEPEND="virtual/jre"
-
-S="${WORKDIR}"
-
-pkg_setup() {
-	einfo "Fixing java access violations ..."
-	# learned from bug #387227
-	# opened a bug #402507 to get this .systemPrefs directory pre-created for everybody
-	addpredict /opt/icedtea-bin-7.2.0/jre/.systemPrefs
-	addpredict /usr/local/bin/OBO-Edit
-}
-
-src_prepare(){
-	default
-	dodir /opt/OBO-Edit2/.install4j /usr/bin
-	cp "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh "${WORKDIR}" || die
-
-	# /var/tmp/portage/sci-biology/OBO-Edit-2.1.1.6/image//opt/OBO-Edit2/.install4j/response.varfile
-	sed -e "s#\"\${D}\"#"${D}"#g" "${FILESDIR}"/response.varfile | \
-	sed -e "s#\"\${HOME}\"#"${HOME}"#g" | \
-	sed -e "s@sys.symlinkDir=/usr/local/bin@#sys.symlinkDir=/usr/local/bin@" \
-	> "${D}"/opt/OBO-Edit2/.install4j/response.varfile || die "sed failed"
-	cp -r "${D}"/opt/OBO-Edit2/.install4j "${HOME}" || die
-
-	# for user root install4j writes into /opt/icedtea-bin-7.2.0/jre/.systemPrefs or whatever it
-	# found via JAVA_HOME or similar variables
-	# for other users it writes into $HOME/.java/.userPrefs/
-
-	# trick setting -Djava.util.prefs.systemRoot="${TMPDIR}" does not work
-	sed \
-		-e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${HOME}" -Dinstall4j.jvmDir="${HOME}" -Dsys.symlinkDir="${D}"/usr/bin -Djava.util.prefs.systemRoot="${HOME}"@" \
-		-i "${WORKDIR}"/"${PN}"_unix_install4j-"${PV}".sh \
-		|| die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found"
-
-	chmod u+rx "${WORKDIR}/${PN}"_unix_install4j-"${PV}".sh || die
-}
-
-src_install(){
-	# it looks install4j removes the target installation direcotry before writing into it :((
-	#
-	# cat "${TMPDIR}"/.install4j/response.varfile
-	# chmod a-w "${TMPDIR}"/.install4j/response.varfile
-
-	INSTALL4J_KEEP_TEMP="yes" \
-		sh "${WORKDIR}"/"${PN}"_unix_install4j-"${PV}".sh -q \
-		--varfile="${HOME}"/.install4j/response.varfile \
-		--destination="${D}"/opt/OBO-Edit2 \
-		-dir "${D}"/opt/OBO-Edit2 \
-		|| die "Failed to run the self-extracting ${WORKDIR}/${PN}_unix_install4j-${PV}.sh file"
-
-	find . -name firstrun -delete || die
-
-	echo "PATH=/opt/OBO-Edit2" > 99OBO-Edit || die
-	doenvd 99OBO-Edit
-}

diff --git a/sci-biology/OBO-Edit/files/response.varfile b/sci-biology/OBO-Edit/files/response.varfile
deleted file mode 100644
index 8c4361d01..000000000
--- a/sci-biology/OBO-Edit/files/response.varfile
+++ /dev/null
@@ -1,10 +0,0 @@
-#install4j response file for OBO-Edit2 2.1.1-b6
-#Tue Feb 07 03:08:04 MET 2012
-sys.component.89$Boolean=false
-createDesktopLinkAction$Boolean=false
-oboedit.memoryAlloc$Integer=3456
-sys.programGroupDisabled$Boolean=true
-sys.component.61$Boolean=true
-sys.symlinkDir="${D}"usr/bin
-sys.languageId=en
-sys.installationDir="${D}"opt/OBO-Edit2

diff --git a/sci-biology/OBO-Edit/metadata.xml b/sci-biology/OBO-Edit/metadata.xml
deleted file mode 100644
index acbbc35a4..000000000
--- a/sci-biology/OBO-Edit/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="sourceforge">geneontology</remote-id>
-	</upstream>
-</pkgmetadata>