[gentoo-commits] proj/sci:master commit in: sci-biology/oases/, sci-biology/oases/files/

["Andrew Ammerlaan" <andrewammerlaan@gentoo.org>]

commit:     acc21d1b10bd722943d3d422baeeadb52098112c
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jan 25 13:11:45 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 25 13:11:45 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=acc21d1b

sci-biology/oases: drop dead package

last update 2015

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/oases/files/Makefile.patch | 15 -------------
 sci-biology/oases/metadata.xml         | 12 ----------
 sci-biology/oases/oases-0.2.08.ebuild  | 40 ----------------------------------
 sci-biology/oases/oases-9999.ebuild    | 40 ----------------------------------
 4 files changed, 107 deletions(-)

diff --git a/sci-biology/oases/files/Makefile.patch b/sci-biology/oases/files/Makefile.patch
deleted file mode 100644
index fcd0842ff..000000000
--- a/sci-biology/oases/files/Makefile.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- a/Makefile	2016-04-10 22:34:31.976222662 +0200
-+++ b/Makefile	2016-04-10 22:37:49.636225327 +0200
-@@ -1,8 +1,8 @@
--CC = gcc
--CFLAGS = -Wall
--DEBUG = -g
-+CC ?= gcc
-+CFLAGS ?= -Wall
-+DEBUG ?= -g
- LIBS = -lm
--OPT = -O3
-+#OPT = -O3
- export MAXKMERLENGTH = 64
- export CATEGORIES = 2
- DEF = -D MAXKMERLENGTH=$(MAXKMERLENGTH) -D CATEGORIES=$(CATEGORIES)

diff --git a/sci-biology/oases/metadata.xml b/sci-biology/oases/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/oases/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-biology/oases/oases-0.2.08.ebuild b/sci-biology/oases/oases-0.2.08.ebuild
deleted file mode 100644
index 74ad30f59..000000000
--- a/sci-biology/oases/oases-0.2.08.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="De novo transcriptome assembler"
-HOMEPAGE="http://www.ebi.ac.uk/~zerbino/oases"
-if [ "$PV" == "9999" ]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/dzerbino/oases.git"
-	SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf"
-else
-	SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/oases_0.2.08.tgz
-		http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf"
-	S="${WORKDIR}/oases_0.2.8"
-	KEYWORDS=""
-	# fails to find globals.h, but which globals.h does it want?
-fi
-
-LICENSE="GPL-3"
-SLOT="0"
-
-DEPEND=""
-RDEPEND="${DEPEND}
-	>=sci-biology/velvet-1.2.08"
-
-PATCHES=(
-	"${FILESDIR}/Makefile.patch"
-)
-
-src_prepare(){
-	default
-	sed -e 's#cleanobj velvet oases doc#oases#' -i Makefile || die
-}
-
-src_install(){
-	dobin oases
-	dodoc README.md
-	dodoc "${DISTDIR}"/OasesManual.pdf
-}

diff --git a/sci-biology/oases/oases-9999.ebuild b/sci-biology/oases/oases-9999.ebuild
deleted file mode 100644
index 74ad30f59..000000000
--- a/sci-biology/oases/oases-9999.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="De novo transcriptome assembler"
-HOMEPAGE="http://www.ebi.ac.uk/~zerbino/oases"
-if [ "$PV" == "9999" ]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/dzerbino/oases.git"
-	SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf"
-else
-	SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/oases_0.2.08.tgz
-		http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf"
-	S="${WORKDIR}/oases_0.2.8"
-	KEYWORDS=""
-	# fails to find globals.h, but which globals.h does it want?
-fi
-
-LICENSE="GPL-3"
-SLOT="0"
-
-DEPEND=""
-RDEPEND="${DEPEND}
-	>=sci-biology/velvet-1.2.08"
-
-PATCHES=(
-	"${FILESDIR}/Makefile.patch"
-)
-
-src_prepare(){
-	default
-	sed -e 's#cleanobj velvet oases doc#oases#' -i Makefile || die
-}
-
-src_install(){
-	dobin oases
-	dodoc README.md
-	dodoc "${DISTDIR}"/OasesManual.pdf
-}