From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id BD515158087 for ; Tue, 25 Jan 2022 10:20:06 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 2217F2BC014; Tue, 25 Jan 2022 10:20:05 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 624582BC016 for ; Tue, 25 Jan 2022 10:20:04 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id B523D342C42 for ; Tue, 25 Jan 2022 10:20:01 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 20FD7262 for ; Tue, 25 Jan 2022 10:20:00 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1643102683.c3873aa86ae47e19e52565bef9f69979f97b5a8e.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/vcflib/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/vcflib/vcflib-1.0.2.ebuild sci-biology/vcflib/vcflib-1.0.3.ebuild X-VCS-Directories: sci-biology/vcflib/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: c3873aa86ae47e19e52565bef9f69979f97b5a8e X-VCS-Branch: master Date: Tue, 25 Jan 2022 10:20:00 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: fc0d2852-567c-47ca-914a-2d3000ec53fc X-Archives-Hash: cf9f69755f3d9cbc39c34b9c0d5f8c0f commit: c3873aa86ae47e19e52565bef9f69979f97b5a8e Author: Andrew Ammerlaan gentoo org> AuthorDate: Tue Jan 25 09:24:43 2022 +0000 Commit: Andrew Ammerlaan gentoo org> CommitDate: Tue Jan 25 09:24:43 2022 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c3873aa8 sci-biology/vcflib: bump to 1.0.3 Need a proper release tarball (including the submodules) before we can add keywords here Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan gentoo.org> .../vcflib/{vcflib-1.0.2.ebuild => vcflib-1.0.3.ebuild} | 15 +++++---------- 1 file changed, 5 insertions(+), 10 deletions(-) diff --git a/sci-biology/vcflib/vcflib-1.0.2.ebuild b/sci-biology/vcflib/vcflib-1.0.3.ebuild similarity index 75% rename from sci-biology/vcflib/vcflib-1.0.2.ebuild rename to sci-biology/vcflib/vcflib-1.0.3.ebuild index 272e69483..d4cf1e02f 100644 --- a/sci-biology/vcflib/vcflib-1.0.2.ebuild +++ b/sci-biology/vcflib/vcflib-1.0.3.ebuild @@ -1,18 +1,17 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 inherit cmake toolchain-funcs DESCRIPTION="VCF/BED utils, Genotype Phenotype Association Toolkit (GPAT++)" HOMEPAGE="https://github.com/vcflib/vcflib" -SRC_URI="https://github.com/vcflib/vcflib/releases/download/v${PV}/${P}-src.tar.gz" - -# vcflib is incorporated into several projects, such as freebayes +SRC_URI="https://github.com/vcflib/vcflib/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" LICENSE="MIT-with-advertising" SLOT="0" +# No proper release tarball for this release yet KEYWORDS="" IUSE="openmp" @@ -22,10 +21,6 @@ DEPEND=" sci-biology/tabixpp " RDEPEND="${DEPEND}" -# contains bundled sci-biology/htslib ? -# see also ./include for possible traces of other bundled sw - -S="${WORKDIR}/${PN}" src_prepare(){ cmake_src_prepare @@ -47,7 +42,7 @@ src_prepare(){ src_compile(){ mycmakeargs=( -DOPENMP="$(use_enable openmp)" - -DHTSLIB_LOCAL=NO + -DHTSLIB_LOCAL=ON ) cmake_src_compile }