* [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/
@ 2022-01-23 13:32 Andrew Ammerlaan
0 siblings, 0 replies; 9+ messages in thread
From: Andrew Ammerlaan @ 2022-01-23 13:32 UTC (permalink / raw
To: gentoo-commits
commit: ccc86e1e9fe7b3fca58f75d094e1d49edb667e88
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 23 13:32:45 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Sun Jan 23 13:32:45 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ccc86e1e
sci-biology/blasr: bump to 5.3.5
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
.../blasr/{blasr-9999.ebuild => blasr-5.3.5.ebuild} | 14 ++++++--------
1 file changed, 6 insertions(+), 8 deletions(-)
diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-5.3.5.ebuild
similarity index 53%
rename from sci-biology/blasr/blasr-9999.ebuild
rename to sci-biology/blasr/blasr-5.3.5.ebuild
index cbd012727..8552bff9e 100644
--- a/sci-biology/blasr/blasr-9999.ebuild
+++ b/sci-biology/blasr/blasr-5.3.5.ebuild
@@ -1,26 +1,24 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=8
-inherit meson git-r3
+inherit meson
DESCRIPTION="The PacBio long read aligner"
HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR"
-EGIT_REPO_URI="https://github.com/PacificBiosciences/blasr.git"
-#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz"
+SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz"
LICENSE="blasr"
SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
BDEPEND="
dev-util/cmake
virtual/pkgconfig
"
DEPEND="
- sci-biology/pbbam
sci-biology/libblasr
- dev-libs/boost:=[threads(-)]
+ dev-libs/boost:=
"
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/
@ 2023-02-17 21:00 Horea Christian
0 siblings, 0 replies; 9+ messages in thread
From: Horea Christian @ 2023-02-17 21:00 UTC (permalink / raw
To: gentoo-commits
commit: 0be70757d0c75bf2465dfec009bca25a6baf2286
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Feb 17 20:58:28 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Feb 17 20:58:31 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0be70757
sci-biology/blasr: treeclean (missing sources could not find any)
Apparently this project was pulled by upstream and is no longer mentioned on the
HOMEPAGE (which redirects to https://www.pacb.com/support/documentation/ ).
There seems to be a copy on GitHub https://github.com/BioinformaticsArchive/blasr
but it has no releases and it seems severely up to date.
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/blasr/blasr-5.3.5.ebuild | 24 ------------------------
sci-biology/blasr/metadata.xml | 8 --------
2 files changed, 32 deletions(-)
diff --git a/sci-biology/blasr/blasr-5.3.5.ebuild b/sci-biology/blasr/blasr-5.3.5.ebuild
deleted file mode 100644
index 85e4ea66d..000000000
--- a/sci-biology/blasr/blasr-5.3.5.ebuild
+++ /dev/null
@@ -1,24 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit meson
-
-DESCRIPTION="The PacBio long read aligner"
-HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR"
-SRC_URI="https://github.com/PacificBiosciences/blasr/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="blasr"
-SLOT="0"
-KEYWORDS="~amd64"
-
-BDEPEND="
- dev-util/cmake
- virtual/pkgconfig
-"
-DEPEND="
- sci-biology/libblasr
- dev-libs/boost:=
-"
-RDEPEND="${DEPEND}"
diff --git a/sci-biology/blasr/metadata.xml b/sci-biology/blasr/metadata.xml
deleted file mode 100644
index 8417d1580..000000000
--- a/sci-biology/blasr/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/
@ 2022-01-25 15:34 Andrew Ammerlaan
0 siblings, 0 replies; 9+ messages in thread
From: Andrew Ammerlaan @ 2022-01-25 15:34 UTC (permalink / raw
To: gentoo-commits
commit: a2228f613414291c239ed579cd29920ace2aa2e8
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jan 25 15:30:46 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 25 15:30:46 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a2228f61
sci-biology/blasr: fix ObsoleteUri
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/blasr/blasr-5.3.5.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/blasr/blasr-5.3.5.ebuild b/sci-biology/blasr/blasr-5.3.5.ebuild
index 8552bff9e..85e4ea66d 100644
--- a/sci-biology/blasr/blasr-5.3.5.ebuild
+++ b/sci-biology/blasr/blasr-5.3.5.ebuild
@@ -7,7 +7,7 @@ inherit meson
DESCRIPTION="The PacBio long read aligner"
HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR"
-SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz"
+SRC_URI="https://github.com/PacificBiosciences/blasr/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="blasr"
SLOT="0"
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/
@ 2021-08-31 9:45 Andrew Ammerlaan
0 siblings, 0 replies; 9+ messages in thread
From: Andrew Ammerlaan @ 2021-08-31 9:45 UTC (permalink / raw
To: gentoo-commits
commit: 547cdc94f404ad7bf0f4c700a5aeb48015435f88
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 31 09:35:24 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Aug 31 09:35:24 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=547cdc94
sci-biology/blasr: add MissingUseDepDefault
Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/blasr/blasr-9999.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild
index 6f5d10b16..cbd012727 100644
--- a/sci-biology/blasr/blasr-9999.ebuild
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -21,6 +21,6 @@ BDEPEND="
DEPEND="
sci-biology/pbbam
sci-biology/libblasr
- dev-libs/boost:=[threads]
+ dev-libs/boost:=[threads(-)]
"
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/
@ 2021-01-13 20:18 Andrew Ammerlaan
0 siblings, 0 replies; 9+ messages in thread
From: Andrew Ammerlaan @ 2021-01-13 20:18 UTC (permalink / raw
To: gentoo-commits
commit: f7b9dacac004dc76d69a9b619f77963a5f83ca17
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Jan 13 20:17:55 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Jan 13 20:17:55 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f7b9daca
sci-biology/blasr: add dep on libblasr
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/blasr/blasr-9999.ebuild | 43 +++++++++----------------------------
1 file changed, 10 insertions(+), 33 deletions(-)
diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild
index 3fe868450..6f5d10b16 100644
--- a/sci-biology/blasr/blasr-9999.ebuild
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -1,49 +1,26 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-inherit git-r3
+inherit meson git-r3
DESCRIPTION="The PacBio long read aligner"
HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR"
-#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz"
-SRC_URI=""
EGIT_REPO_URI="https://github.com/PacificBiosciences/blasr.git"
+#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz"
LICENSE="blasr"
SLOT="0"
-IUSE="hdf5"
KEYWORDS=""
-CDEPEND="
- dev-util/meson
- dev-util/ninja
+BDEPEND="
dev-util/cmake
- dev-util/pkgconfig"
-# needs libblasr
+ virtual/pkgconfig
+"
DEPEND="
sci-biology/pbbam
+ sci-biology/libblasr
dev-libs/boost:=[threads]
- hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h
-RDEPEND=""
-
-S="${WORKDIR}/blasr-9999"
-
-#src_configure(){
-# if use hdf5; then \
-# python ./configure.py --shared --sub --no-pbbam HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die
-# else
-# python ./configure.py --shared --sub --no-pbbam || die
-# fi
-#}
-
-src_compile(){
- bash scripts/ci/build.sh || die
- # BUG: meson.build:54:0: ERROR: Dependency "pbbam" not found, tried pkgconfig and cmake
-}
-
-src_install() {
- dodir /usr/bin
- emake install ASSEMBLY_HOME="${ED}/usr"
-}
+"
+RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/
@ 2019-01-17 12:38 Martin Mokrejs
0 siblings, 0 replies; 9+ messages in thread
From: Martin Mokrejs @ 2019-01-17 12:38 UTC (permalink / raw
To: gentoo-commits
commit: f093654801e9bb7ad831c30a592f1da016ed9aca
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jan 17 12:38:17 2019 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jan 17 12:38:17 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f0936548
sci-biology/blasr: partial improvements of the ebuild
Package-Manager: Portage-2.3.55, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
sci-biology/blasr/blasr-9999.ebuild | 30 ++++++++++++++++++++++--------
1 file changed, 22 insertions(+), 8 deletions(-)
diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild
index 2b1716bdd..3fe868450 100644
--- a/sci-biology/blasr/blasr-9999.ebuild
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -16,17 +16,31 @@ SLOT="0"
IUSE="hdf5"
KEYWORDS=""
-DEPEND="hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h
+CDEPEND="
+ dev-util/meson
+ dev-util/ninja
+ dev-util/cmake
+ dev-util/pkgconfig"
+# needs libblasr
+DEPEND="
+ sci-biology/pbbam
+ dev-libs/boost:=[threads]
+ hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h
RDEPEND=""
S="${WORKDIR}/blasr-9999"
-src_configure(){
- if use hdf5; then \
- python ./configure.py --shared --sub --no-pbbam HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die
- else
- python ./configure.py --shared --sub --no-pbbam || die
- fi
+#src_configure(){
+# if use hdf5; then \
+# python ./configure.py --shared --sub --no-pbbam HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die
+# else
+# python ./configure.py --shared --sub --no-pbbam || die
+# fi
+#}
+
+src_compile(){
+ bash scripts/ci/build.sh || die
+ # BUG: meson.build:54:0: ERROR: Dependency "pbbam" not found, tried pkgconfig and cmake
}
src_install() {
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/
@ 2016-06-23 15:45 Martin Mokrejs
0 siblings, 0 replies; 9+ messages in thread
From: Martin Mokrejs @ 2016-06-23 15:45 UTC (permalink / raw
To: gentoo-commits
commit: dcaef9198998b857285e72ea009b7df8d4a1c175
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jun 23 15:45:42 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jun 23 15:45:42 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=dcaef919
sci-biology/blasr: improved ebuild a bit, waiting for bug #586816 now
Package-Manager: portage-2.2.28
sci-biology/blasr/blasr-9999.ebuild | 18 ++++++++++++------
1 file changed, 12 insertions(+), 6 deletions(-)
diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild
index ca4ff28..e651b6e 100644
--- a/sci-biology/blasr/blasr-9999.ebuild
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -1,11 +1,9 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
-MY_HASH=885c33a
-
inherit git-r3
DESCRIPTION="The PacBio long read aligner"
@@ -16,13 +14,21 @@ EGIT_REPO_URI="https://github.com/PacificBiosciences/blasr.git"
LICENSE="blasr"
SLOT="0"
-IUSE=""
+IUSE="hdf5"
KEYWORDS=""
-DEPEND="sci-libs/hdf5[cxx]"
+DEPEND="hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h
RDEPEND=""
-S="${WORKDIR}/blasr-${MY_HASH}"
+S="${WORKDIR}/blasr-9999"
+
+src_configure(){
+ if use hdf5; then \
+ python ./configure.py --shared --sub --no-pbbam HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die
+ else
+ python ./configure.py --shared --sub --no-pbbam || die
+ fi
+}
src_install() {
dodir /usr/bin
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/
@ 2014-01-06 19:27 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2014-01-06 19:27 UTC (permalink / raw
To: gentoo-commits
commit: 0f86f7079dec64da1b2a0318cac230dd862e1a07
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 6 18:59:13 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 6 18:59:13 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0f86f707
sci-biology/blasr: Switch from git-2 to git-r3
Package-Manager: portage-2.2.8
---
sci-biology/blasr/ChangeLog | 5 ++++-
sci-biology/blasr/blasr-9999.ebuild | 6 ++----
2 files changed, 6 insertions(+), 5 deletions(-)
diff --git a/sci-biology/blasr/ChangeLog b/sci-biology/blasr/ChangeLog
index 7a26c1b..6176561 100644
--- a/sci-biology/blasr/ChangeLog
+++ b/sci-biology/blasr/ChangeLog
@@ -1,7 +1,10 @@
# ChangeLog for sci-biology/blasr
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Jan 2014; Justin Lecher <jlec@gentoo.org> blasr-9999.ebuild:
+ Switch from git-2 to git-r3
+
03 Mar 2013; Justin Lecher <jlec@gentoo.org> blasr-9999.ebuild:
correct license
diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild
index 9d620ba..634535f 100644
--- a/sci-biology/blasr/blasr-9999.ebuild
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-9999.ebuild,v 1.1 2011/10/31 21:18:17 weaver Exp $
@@ -6,7 +6,7 @@ EAPI=5
MY_HASH=885c33a
-inherit git-2
+inherit git-r3
DESCRIPTION="The PacBio long read aligner"
HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR"
@@ -24,8 +24,6 @@ RDEPEND=""
S="${WORKDIR}/blasr-${MY_HASH}"
-ASSEMBLY_HOME="${D}/usr"
-
src_install() {
dodir /usr/bin
emake install ASSEMBLY_HOME="${ED}/usr" || die
^ permalink raw reply related [flat|nested] 9+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/blasr/
@ 2012-03-22 20:44 Andrey Kislyuk
0 siblings, 0 replies; 9+ messages in thread
From: Andrey Kislyuk @ 2012-03-22 20:44 UTC (permalink / raw
To: gentoo-commits
commit: 773f59b25f75fd5e9b2492e3bd5c318c520d4866
Author: Andrey Kislyuk <kislyuk <AT> gmail <DOT> com>
AuthorDate: Thu Mar 22 20:43:46 2012 +0000
Commit: Andrey Kislyuk <weaver <AT> gentoo <DOT> org>
CommitDate: Thu Mar 22 20:43:46 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=773f59b2
New package, ebuild written by me
---
sci-biology/blasr/ChangeLog | 10 ++++++++++
sci-biology/blasr/blasr-9999.ebuild | 33 +++++++++++++++++++++++++++++++++
sci-biology/blasr/metadata.xml | 9 +++++++++
3 files changed, 52 insertions(+), 0 deletions(-)
diff --git a/sci-biology/blasr/ChangeLog b/sci-biology/blasr/ChangeLog
new file mode 100644
index 0000000..f10ba22
--- /dev/null
+++ b/sci-biology/blasr/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/blasr
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*blasr-9999 (22 Mar 2012)
+
+ 22 Mar 2012; Andrey Kislyuk <weaver@gentoo.org> +blasr-9999.ebuild,
+ +metadata.xml:
+ New package, ebuild written by me
+
diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild
new file mode 100644
index 0000000..94e874f
--- /dev/null
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-9999.ebuild,v 1.1 2011/10/31 21:18:17 weaver Exp $
+
+EAPI=4
+
+MY_HASH=885c33a
+
+EGIT_REPO_URI="https://github.com/PacificBiosciences/blasr.git"
+
+inherit git
+
+DESCRIPTION="The PacBio long read aligner"
+HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR"
+#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz"
+SRC_URI=""
+
+LICENSE="as-is"
+SLOT="0"
+IUSE=""
+KEYWORDS=""
+
+DEPEND="sci-libs/hdf5[cxx]"
+RDEPEND=""
+
+S="${WORKDIR}/blasr-${MY_HASH}"
+
+ASSEMBLY_HOME="${D}/usr"
+
+src_install() {
+ dodir /usr/bin
+ make install ASSEMBLY_HOME="${D}/usr" || die
+}
diff --git a/sci-biology/blasr/metadata.xml b/sci-biology/blasr/metadata.xml
new file mode 100644
index 0000000..3302123
--- /dev/null
+++ b/sci-biology/blasr/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 9+ messages in thread
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