* [gentoo-commits] repo/gentoo:master commit in: sys-cluster/openmpi/files/, sys-cluster/openmpi/
@ 2022-01-03 0:22 Sam James
0 siblings, 0 replies; 2+ messages in thread
From: Sam James @ 2022-01-03 0:22 UTC (permalink / raw
To: gentoo-commits
commit: 1e46e06ae70156fb4d4db508c727b1812e6a7aa4
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 3 00:20:38 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Mon Jan 3 00:21:48 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1e46e06a
sys-cluster/openmpi: disable heterogeneous (unsupported, broken)
Upstream have let us know (thank you!) that heterogeneous should
_not_ be used for anything before 5.0.x (which is not out yet).
We can look at restoring support in the future once it is ready
upstream. Upstream documentation has been fixed to reflect this too.
Closes: https://bugs.gentoo.org/828123
Thanks-to: Jeff Squyres <jsquyres <AT> cisco.com>
Signed-off-by: Sam James <sam <AT> gentoo.org>
.../files/openmpi-4.1.2-missing-includes.patch | 32 ----------------------
sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild | 6 ++--
sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild | 6 ++--
sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild | 6 ++--
sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild | 6 ++--
sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild | 6 ++--
sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild | 6 ++--
sys-cluster/openmpi/openmpi-4.0.7.ebuild | 6 ++--
sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild | 6 ++--
sys-cluster/openmpi/openmpi-4.1.2.ebuild | 12 ++++----
10 files changed, 30 insertions(+), 62 deletions(-)
diff --git a/sys-cluster/openmpi/files/openmpi-4.1.2-missing-includes.patch b/sys-cluster/openmpi/files/openmpi-4.1.2-missing-includes.patch
deleted file mode 100644
index 89abc049df4e..000000000000
--- a/sys-cluster/openmpi/files/openmpi-4.1.2-missing-includes.patch
+++ /dev/null
@@ -1,32 +0,0 @@
-https://github.com/open-mpi/ompi/commit/927e9aa97373dac652f9cba4813e6ee609ca2830
-https://bugs.gentoo.org/828123
-
-From: George Bosilca <bosilca@icl.utk.edu>
-Date: Tue, 23 Nov 2021 14:28:11 -0500
-Subject: [PATCH] Fix compile failure with enable-heterogeneous.
-
-An internal header file was missing, leading to an incomplete type.
-
-Fixes #9697.
-
-Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
---- a/ompi/mca/coll/base/coll_base_alltoall.c
-+++ b/ompi/mca/coll/base/coll_base_alltoall.c
-@@ -29,6 +29,7 @@
- #include "mpi.h"
- #include "ompi/constants.h"
- #include "ompi/datatype/ompi_datatype.h"
-+#include "opal/datatype/opal_convertor_internal.h"
- #include "ompi/communicator/communicator.h"
- #include "ompi/mca/coll/coll.h"
- #include "ompi/mca/coll/base/coll_tags.h"
---- a/ompi/mca/coll/base/coll_base_alltoallv.c
-+++ b/ompi/mca/coll/base/coll_base_alltoallv.c
-@@ -31,6 +31,7 @@
- #include "mpi.h"
- #include "ompi/constants.h"
- #include "ompi/datatype/ompi_datatype.h"
-+#include "opal/datatype/opal_convertor_internal.h"
- #include "ompi/communicator/communicator.h"
- #include "ompi/mca/coll/coll.h"
- #include "ompi/mca/coll/base/coll_tags.h"
diff --git a/sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild
index 7dedbcb532f9..6218dc7f7a65 100644
--- a/sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.0.2-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P
LICENSE="BSD"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
-IUSE="cma cuda cxx fortran heterogeneous ipv6 java romio
+IUSE="cma cuda cxx fortran ipv6 java romio
${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
@@ -111,7 +111,7 @@ multilib_src_configure() {
$(use_with cma) \
$(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \
$(use_enable romio io-romio) \
- $(use_enable heterogeneous) \
+ --disable-heterogeneous \
$(use_enable ipv6) \
$(multilib_native_use_enable java mpi-java) \
$(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
diff --git a/sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild
index 7dedbcb532f9..6218dc7f7a65 100644
--- a/sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.0.3-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P
LICENSE="BSD"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
-IUSE="cma cuda cxx fortran heterogeneous ipv6 java romio
+IUSE="cma cuda cxx fortran ipv6 java romio
${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
@@ -111,7 +111,7 @@ multilib_src_configure() {
$(use_with cma) \
$(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \
$(use_enable romio io-romio) \
- $(use_enable heterogeneous) \
+ --disable-heterogeneous \
$(use_enable ipv6) \
$(multilib_native_use_enable java mpi-java) \
$(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
diff --git a/sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild
index 7dedbcb532f9..6218dc7f7a65 100644
--- a/sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.0.4-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P
LICENSE="BSD"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
-IUSE="cma cuda cxx fortran heterogeneous ipv6 java romio
+IUSE="cma cuda cxx fortran ipv6 java romio
${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
@@ -111,7 +111,7 @@ multilib_src_configure() {
$(use_with cma) \
$(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \
$(use_enable romio io-romio) \
- $(use_enable heterogeneous) \
+ --disable-heterogeneous \
$(use_enable ipv6) \
$(multilib_native_use_enable java mpi-java) \
$(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
diff --git a/sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild b/sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild
index 910b08a8e8f6..3ab02e1aff6a 100644
--- a/sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.0.5-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P
LICENSE="BSD"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
-IUSE="cma cuda cxx fortran heterogeneous ipv6 java romio
+IUSE="cma cuda cxx fortran ipv6 java romio
${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
@@ -111,7 +111,7 @@ multilib_src_configure() {
$(use_with cma) \
$(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \
$(use_enable romio io-romio) \
- $(use_enable heterogeneous) \
+ --disable-heterogeneous \
$(use_enable ipv6) \
$(multilib_native_use_enable java mpi-java) \
$(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
diff --git a/sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild b/sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild
index 6609fda95cfc..dedc2ebe1349 100644
--- a/sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.0.5-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -31,7 +31,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P
LICENSE="BSD"
SLOT="0"
KEYWORDS="~alpha amd64 arm ~ia64 ppc ppc64 ~riscv sparc x86 ~amd64-linux"
-IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio
+IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio
${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
@@ -112,7 +112,7 @@ multilib_src_configure() {
--with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)"
$(use_enable cxx mpi-cxx)
- $(use_enable heterogeneous)
+ --disable-heterogeneous
$(use_enable ipv6)
$(use_enable libompitrace)
$(use_enable peruse)
diff --git a/sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild
index 93df7d8495cc..e7d49f6d7e45 100644
--- a/sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.0.6-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -32,7 +32,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P
LICENSE="BSD"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux"
-IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio
+IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio
${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
@@ -113,7 +113,7 @@ multilib_src_configure() {
--with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)"
$(use_enable cxx mpi-cxx)
- $(use_enable heterogeneous)
+ --disable-heterogeneous
$(use_enable ipv6)
$(use_enable libompitrace)
$(use_enable peruse)
diff --git a/sys-cluster/openmpi/openmpi-4.0.7.ebuild b/sys-cluster/openmpi/openmpi-4.0.7.ebuild
index 93df7d8495cc..e7d49f6d7e45 100644
--- a/sys-cluster/openmpi/openmpi-4.0.7.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.0.7.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -32,7 +32,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P
LICENSE="BSD"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux"
-IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio
+IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio
${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
@@ -113,7 +113,7 @@ multilib_src_configure() {
--with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)"
$(use_enable cxx mpi-cxx)
- $(use_enable heterogeneous)
+ --disable-heterogeneous
$(use_enable ipv6)
$(use_enable libompitrace)
$(use_enable peruse)
diff --git a/sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild b/sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild
index 6652c805f75a..aae744d9642b 100644
--- a/sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.1.1-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -32,7 +32,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P
LICENSE="BSD"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux"
-IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio
+IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio
${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
@@ -115,7 +115,7 @@ multilib_src_configure() {
--with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)"
$(use_enable cxx mpi-cxx)
- $(use_enable heterogeneous)
+ --disable-heterogeneous
$(use_enable ipv6)
$(use_enable libompitrace)
$(use_enable peruse)
diff --git a/sys-cluster/openmpi/openmpi-4.1.2.ebuild b/sys-cluster/openmpi/openmpi-4.1.2.ebuild
index 036f1cbe8cb6..314ce22c8b3a 100644
--- a/sys-cluster/openmpi/openmpi-4.1.2.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.1.2.ebuild
@@ -32,7 +32,7 @@ SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P
LICENSE="BSD"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux"
-IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio
+IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio
${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
@@ -71,10 +71,6 @@ MULTILIB_WRAPPED_HEADERS=(
/usr/include/openmpi/mpiext/mpiext_cuda_c.h
)
-PATCHES=(
- "${FILESDIR}"/${PN}-4.1.2-missing-includes.patch
-)
-
pkg_setup() {
fortran-2_pkg_setup
java-pkg-opt-2_pkg_setup
@@ -118,8 +114,12 @@ multilib_src_configure() {
--with-libevent="${EPREFIX}/usr"
--with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)"
+ # Re-enable for 5.0!
+ # See https://github.com/open-mpi/ompi/issues/9697#issuecomment-1003746357
+ # and https://bugs.gentoo.org/828123#c14
+ --disable-heterogeneous
+
$(use_enable cxx mpi-cxx)
- $(use_enable heterogeneous)
$(use_enable ipv6)
$(use_enable libompitrace)
$(use_enable peruse)
^ permalink raw reply related [flat|nested] 2+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sys-cluster/openmpi/files/, sys-cluster/openmpi/
@ 2022-01-02 3:05 Sam James
0 siblings, 0 replies; 2+ messages in thread
From: Sam James @ 2022-01-02 3:05 UTC (permalink / raw
To: gentoo-commits
commit: fab20bbcbf246d0868b8d70b02ced33972f7c137
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 2 03:02:35 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sun Jan 2 03:02:35 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fab20bbc
sys-cluster/openmpi: add upstream patch for build failure
Closes: https://bugs.gentoo.org/828123
Signed-off-by: Sam James <sam <AT> gentoo.org>
.../files/openmpi-4.1.2-missing-includes.patch | 32 ++++++++++++++++++++++
sys-cluster/openmpi/openmpi-4.1.2.ebuild | 6 +++-
2 files changed, 37 insertions(+), 1 deletion(-)
diff --git a/sys-cluster/openmpi/files/openmpi-4.1.2-missing-includes.patch b/sys-cluster/openmpi/files/openmpi-4.1.2-missing-includes.patch
new file mode 100644
index 000000000000..89abc049df4e
--- /dev/null
+++ b/sys-cluster/openmpi/files/openmpi-4.1.2-missing-includes.patch
@@ -0,0 +1,32 @@
+https://github.com/open-mpi/ompi/commit/927e9aa97373dac652f9cba4813e6ee609ca2830
+https://bugs.gentoo.org/828123
+
+From: George Bosilca <bosilca@icl.utk.edu>
+Date: Tue, 23 Nov 2021 14:28:11 -0500
+Subject: [PATCH] Fix compile failure with enable-heterogeneous.
+
+An internal header file was missing, leading to an incomplete type.
+
+Fixes #9697.
+
+Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
+--- a/ompi/mca/coll/base/coll_base_alltoall.c
++++ b/ompi/mca/coll/base/coll_base_alltoall.c
+@@ -29,6 +29,7 @@
+ #include "mpi.h"
+ #include "ompi/constants.h"
+ #include "ompi/datatype/ompi_datatype.h"
++#include "opal/datatype/opal_convertor_internal.h"
+ #include "ompi/communicator/communicator.h"
+ #include "ompi/mca/coll/coll.h"
+ #include "ompi/mca/coll/base/coll_tags.h"
+--- a/ompi/mca/coll/base/coll_base_alltoallv.c
++++ b/ompi/mca/coll/base/coll_base_alltoallv.c
+@@ -31,6 +31,7 @@
+ #include "mpi.h"
+ #include "ompi/constants.h"
+ #include "ompi/datatype/ompi_datatype.h"
++#include "opal/datatype/opal_convertor_internal.h"
+ #include "ompi/communicator/communicator.h"
+ #include "ompi/mca/coll/coll.h"
+ #include "ompi/mca/coll/base/coll_tags.h"
diff --git a/sys-cluster/openmpi/openmpi-4.1.2.ebuild b/sys-cluster/openmpi/openmpi-4.1.2.ebuild
index 6652c805f75a..036f1cbe8cb6 100644
--- a/sys-cluster/openmpi/openmpi-4.1.2.ebuild
+++ b/sys-cluster/openmpi/openmpi-4.1.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -71,6 +71,10 @@ MULTILIB_WRAPPED_HEADERS=(
/usr/include/openmpi/mpiext/mpiext_cuda_c.h
)
+PATCHES=(
+ "${FILESDIR}"/${PN}-4.1.2-missing-includes.patch
+)
+
pkg_setup() {
fortran-2_pkg_setup
java-pkg-opt-2_pkg_setup
^ permalink raw reply related [flat|nested] 2+ messages in thread
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