[gentoo-commits] repo/gentoo:master commit in: dev-python/numpy/files/, dev-python/numpy/

["Sam James" <sam@gentoo.org>]

commit:     aeb4bf89ff38ff18c17f51d8c9d0d19cae1c349d
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Wed Nov 17 23:12:39 2021 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Wed Nov 17 23:13:04 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aeb4bf89

dev-python/numpy: add upstream patch for compiler args (fix Ceph build failure)

Bug: https://bugs.gentoo.org/802150
Thanks-to: Hector Martin <marcan <AT> marcan.st>
Signed-off-by: Sam James <sam <AT> gentoo.org>

 .../numpy-1.21.4-build-compiler-args-ceph.patch    |  49 +++++++
 dev-python/numpy/numpy-1.21.4-r1.ebuild            | 144 +++++++++++++++++++++
 2 files changed, 193 insertions(+)

diff --git a/dev-python/numpy/files/numpy-1.21.4-build-compiler-args-ceph.patch b/dev-python/numpy/files/numpy-1.21.4-build-compiler-args-ceph.patch
new file mode 100644
index 000000000000..6a31d2efe970
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.21.4-build-compiler-args-ceph.patch
@@ -0,0 +1,49 @@
+https://github.com/numpy/numpy/commit/689d905f501b7abbddf0fdef241fa586a83e5cd6
+https://github.com/numpy/numpy/pull/20116
+https://bugs.gentoo.org/802150
+
+From 7dcf62379f41407d8f9583d1c2016e3d8ec48384 Mon Sep 17 00:00:00 2001
+From: Hector Martin <marcan@marcan.st>
+Date: Thu, 14 Oct 2021 14:58:52 +0900
+Subject: [PATCH] MAINT: Fix issue with C compiler args containing spaces
+
+Instead of doing a dumb string split, use shlex to make sure args
+containing spaces are handled properly.
+---
+ numpy/distutils/unixccompiler.py | 13 +++++++------
+ 1 file changed, 7 insertions(+), 6 deletions(-)
+
+diff --git a/numpy/distutils/unixccompiler.py b/numpy/distutils/unixccompiler.py
+index 733a9fc5094..4884960fdf2 100644
+--- a/numpy/distutils/unixccompiler.py
++++ b/numpy/distutils/unixccompiler.py
+@@ -5,6 +5,7 @@
+ import os
+ import sys
+ import subprocess
++import shlex
+ 
+ from distutils.errors import CompileError, DistutilsExecError, LibError
+ from distutils.unixccompiler import UnixCCompiler
+@@ -30,15 +31,15 @@ def UnixCCompiler__compile(self, obj, src, ext, cc_args, extra_postargs, pp_opts
+     if 'OPT' in os.environ:
+         # XXX who uses this?
+         from sysconfig import get_config_vars
+-        opt = " ".join(os.environ['OPT'].split())
+-        gcv_opt = " ".join(get_config_vars('OPT')[0].split())
+-        ccomp_s = " ".join(self.compiler_so)
++        opt = shlex.join(shlex.split(os.environ['OPT']))
++        gcv_opt = shlex.join(shlex.split(get_config_vars('OPT')[0]))
++        ccomp_s = shlex.join(self.compiler_so)
+         if opt not in ccomp_s:
+             ccomp_s = ccomp_s.replace(gcv_opt, opt)
+-            self.compiler_so = ccomp_s.split()
+-        llink_s = " ".join(self.linker_so)
++            self.compiler_so = shlex.split(ccomp_s)
++        llink_s = shlex.join(self.linker_so)
+         if opt not in llink_s:
+-            self.linker_so = llink_s.split() + opt.split()
++            self.linker_so = self.linker_so + shlex.split(opt)
+ 
+     display = '%s: %s' % (os.path.basename(self.compiler_so[0]), src)
+ 

diff --git a/dev-python/numpy/numpy-1.21.4-r1.ebuild b/dev-python/numpy/numpy-1.21.4-r1.ebuild
new file mode 100644
index 000000000000..df96b10fdb70
--- /dev/null
+++ b/dev-python/numpy/numpy-1.21.4-r1.ebuild
@@ -0,0 +1,144 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_REQ_USE="threads(+)"
+
+FORTRAN_NEEDED=lapack
+
+inherit distutils-r1 flag-o-matic fortran-2 toolchain-funcs
+
+DOC_PV=${PV}
+DESCRIPTION="Fast array and numerical python library"
+HOMEPAGE="https://numpy.org/"
+SRC_URI="
+	mirror://pypi/${PN:0:1}/${PN}/${P}.zip
+	doc? (
+		https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-html.zip -> numpy-html-${DOC_PV}.zip
+		https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-ref.pdf -> numpy-ref-${DOC_PV}.pdf
+		https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-user.pdf -> numpy-user-${DOC_PV}.pdf
+	)"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~sparc-solaris ~x64-solaris ~x86-solaris"
+IUSE="doc lapack"
+
+RDEPEND="
+	lapack? (
+		>=virtual/cblas-3.8
+		>=virtual/lapack-3.8
+	)
+"
+BDEPEND="
+	${RDEPEND}
+	app-arch/unzip
+	>=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+	lapack? ( virtual/pkgconfig )
+	test? (
+		>=dev-python/hypothesis-5.8.0[${PYTHON_USEDEP}]
+		>=dev-python/pytz-2019.3[${PYTHON_USEDEP}]
+		>=dev-python/cffi-1.14.0[${PYTHON_USEDEP}]
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/numpy-1.21.0-no-hardcode-blasv2.patch
+	"${FILESDIR}"/numpy-1.21.4-build-compiler-args-ceph.patch
+)
+
+distutils_enable_tests pytest
+
+src_unpack() {
+	default
+	if use doc; then
+		unzip -qo "${DISTDIR}"/numpy-html-${DOC_PV}.zip -d html || die
+	fi
+}
+
+python_prepare_all() {
+	if use lapack; then
+		local incdir="${EPREFIX}"/usr/include
+		local libdir="${EPREFIX}"/usr/$(get_libdir)
+		cat >> site.cfg <<-EOF || die
+			[blas]
+			include_dirs = ${incdir}
+			library_dirs = ${libdir}
+			blas_libs = cblas,blas
+			[lapack]
+			library_dirs = ${libdir}
+			lapack_libs = lapack
+		EOF
+	else
+		export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None
+	fi
+
+	export CC="$(tc-getCC) ${CFLAGS}"
+
+	append-flags -fno-strict-aliasing
+
+	# See progress in http://projects.scipy.org/scipy/numpy/ticket/573
+	# with the subtle difference that we don't want to break Darwin where
+	# -shared is not a valid linker argument
+	if [[ ${CHOST} != *-darwin* ]]; then
+		append-ldflags -shared
+	fi
+
+	# only one fortran to link with:
+	# linking with cblas and lapack library will force
+	# autodetecting and linking to all available fortran compilers
+	append-fflags -fPIC
+	if use lapack; then
+		NUMPY_FCONFIG="config_fc --noopt --noarch"
+		# workaround bug 335908
+		[[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95"
+	fi
+
+	# don't version f2py, we will handle it.
+	sed -i -e '/f2py_exe/s: + os\.path.*$::' numpy/f2py/setup.py || die
+
+	# disable fuzzed tests
+	find numpy/*/tests -name '*.py' -exec sed -i \
+		-e 's:def \(.*_fuzz\):def _\1:' {} + || die
+	# very memory- and disk-hungry
+	sed -i -e 's:test_large_zip:_&:' numpy/lib/tests/test_io.py || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	export MAKEOPTS=-j1 #660754
+
+	distutils-r1_python_compile ${NUMPY_FCONFIG}
+}
+
+python_test() {
+	local deselect=(
+		numpy/typing/tests/test_typing.py::test_reveal[arrayterator.py]
+	)
+
+	distutils_install_for_testing --single-version-externally-managed \
+		--record "${TMPDIR}/record.txt" ${NUMPY_FCONFIG}
+
+	cd "${TEST_DIR}/lib" || die
+	epytest ${deselect[@]/#/--deselect }
+}
+
+python_install() {
+	# https://github.com/numpy/numpy/issues/16005
+	local mydistutilsargs=( build_src )
+	distutils-r1_python_install ${NUMPY_FCONFIG}
+	python_optimize
+}
+
+python_install_all() {
+	local DOCS=( LICENSE.txt README.md THANKS.txt )
+
+	if use doc; then
+		local HTML_DOCS=( "${WORKDIR}"/html/. )
+		DOCS+=( "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf )
+	fi
+
+	distutils-r1_python_install_all
+}