* [gentoo-commits] proj/sci:master commit in: dev-python/hdmf/files/, dev-python/hdmf/
@ 2021-10-29 11:59 Horea Christian
0 siblings, 0 replies; 3+ messages in thread
From: Horea Christian @ 2021-10-29 11:59 UTC (permalink / raw
To: gentoo-commits
commit: a67a1c84befd9b4a6653b197d1f5686e223b7cbb
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Oct 29 11:58:58 2021 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Oct 29 11:58:58 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a67a1c84
dev-python/hdmf: new package (DANDI stack)
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
.../hdmf/files/hdmf-3.1.1-new_jsonschema.patch | 10 +++++++
dev-python/hdmf/hdmf-3.1.1.ebuild | 32 ++++++++++++++++++++++
dev-python/hdmf/metadata.xml | 18 ++++++++++++
3 files changed, 60 insertions(+)
diff --git a/dev-python/hdmf/files/hdmf-3.1.1-new_jsonschema.patch b/dev-python/hdmf/files/hdmf-3.1.1-new_jsonschema.patch
new file mode 100644
index 000000000..989332bb5
--- /dev/null
+++ b/dev-python/hdmf/files/hdmf-3.1.1-new_jsonschema.patch
@@ -0,0 +1,10 @@
+--- a/setup.py 2021-09-24 00:51:55.892741725 -0400
++++ b/setup.py 2021-10-27 14:33:20.733741241 -0400
+@@ -23,7 +23,7 @@
+ 'scipy>=1.1,<2',
+ 'pandas>=1.0.5,<2',
+ 'ruamel.yaml>=0.16,<1',
+- 'jsonschema>=2.6.0,<4',
++ 'jsonschema>=2.6.0',
+ 'setuptools',
+ ]
diff --git a/dev-python/hdmf/hdmf-3.1.1.ebuild b/dev-python/hdmf/hdmf-3.1.1.ebuild
new file mode 100644
index 000000000..1731b0d90
--- /dev/null
+++ b/dev-python/hdmf/hdmf-3.1.1.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..10} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
+inherit distutils-r1
+
+DESCRIPTION="The Hierarchical Data Modeling Framework"
+HOMEPAGE="https://github.com/hdmf-dev/hdmf"
+SRC_URI="https://github.com/hdmf-dev/hdmf/releases/download/${PV}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/jsonschema[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/ruamel-yaml[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ "
+BDEPEND=""
+
+distutils_enable_tests pytest
+
+PATCHES=(
+ "${FILESDIR}/${PN}-3.1.1-new_jsonschema.patch"
+)
diff --git a/dev-python/hdmf/metadata.xml b/dev-python/hdmf/metadata.xml
new file mode 100644
index 000000000..82da7c426
--- /dev/null
+++ b/dev-python/hdmf/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>gentoo@chymera.eu</email>
+ <name>Horea Christian</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <longdescription lang="en">
+ The Hierarchical Data Modeling Framework, or HDMF, is a Python package
+ for working with hierarchical data. It provides APIs for specifying
+ data models, reading and writing data to different storage backends,
+ and representing data with Python object.
+ </longdescription>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/hdmf/files/, dev-python/hdmf/
@ 2022-01-31 8:13 Horea Christian
0 siblings, 0 replies; 3+ messages in thread
From: Horea Christian @ 2022-01-31 8:13 UTC (permalink / raw
To: gentoo-commits
commit: 53abb9d47d74a94be26890306eb605746e1f33ff
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Jan 31 08:13:43 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Jan 31 08:13:43 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=53abb9d4
dev-python/hdmf: revbump for setup.py versions
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
.../hdmf/files/hdmf-3.1.1-new_jsonschema.patch | 10 ----------
dev-python/hdmf/files/hdmf-3.1.1-versions.patch | 21 +++++++++++++++++++++
.../{hdmf-3.1.1.ebuild => hdmf-3.1.1-r1.ebuild} | 4 ++--
3 files changed, 23 insertions(+), 12 deletions(-)
diff --git a/dev-python/hdmf/files/hdmf-3.1.1-new_jsonschema.patch b/dev-python/hdmf/files/hdmf-3.1.1-new_jsonschema.patch
deleted file mode 100644
index 989332bb5..000000000
--- a/dev-python/hdmf/files/hdmf-3.1.1-new_jsonschema.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- a/setup.py 2021-09-24 00:51:55.892741725 -0400
-+++ b/setup.py 2021-10-27 14:33:20.733741241 -0400
-@@ -23,7 +23,7 @@
- 'scipy>=1.1,<2',
- 'pandas>=1.0.5,<2',
- 'ruamel.yaml>=0.16,<1',
-- 'jsonschema>=2.6.0,<4',
-+ 'jsonschema>=2.6.0',
- 'setuptools',
- ]
diff --git a/dev-python/hdmf/files/hdmf-3.1.1-versions.patch b/dev-python/hdmf/files/hdmf-3.1.1-versions.patch
new file mode 100644
index 000000000..58822989d
--- /dev/null
+++ b/dev-python/hdmf/files/hdmf-3.1.1-versions.patch
@@ -0,0 +1,21 @@
+--- a/setup.py 2022-01-31 02:48:24.645837186 -0500
++++ b/setup.py 2022-01-31 02:49:55.066949247 -0500
+@@ -12,12 +12,12 @@
+ schema_dir = 'common/hdmf-common-schema/common'
+
+ reqs = [
+- 'h5py>=2.10,<4',
+- 'numpy>=1.16,<1.22',
+- 'scipy>=1.1,<2',
+- 'pandas>=1.0.5,<2',
+- 'ruamel.yaml>=0.16,<1',
+- 'jsonschema>=2.6.0,<4',
++ 'h5py',
++ 'numpy',
++ 'scipy',
++ 'pandas',
++ 'ruamel.yaml',
++ 'jsonschema',
+ 'setuptools',
+ ]
+
diff --git a/dev-python/hdmf/hdmf-3.1.1.ebuild b/dev-python/hdmf/hdmf-3.1.1-r1.ebuild
similarity index 88%
rename from dev-python/hdmf/hdmf-3.1.1.ebuild
rename to dev-python/hdmf/hdmf-3.1.1-r1.ebuild
index 1731b0d90..76d40c95f 100644
--- a/dev-python/hdmf/hdmf-3.1.1.ebuild
+++ b/dev-python/hdmf/hdmf-3.1.1-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -28,5 +28,5 @@ BDEPEND=""
distutils_enable_tests pytest
PATCHES=(
- "${FILESDIR}/${PN}-3.1.1-new_jsonschema.patch"
+ "${FILESDIR}/${PN}-3.1.1-versions.patch"
)
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/hdmf/files/, dev-python/hdmf/
@ 2023-03-22 14:56 Horea Christian
0 siblings, 0 replies; 3+ messages in thread
From: Horea Christian @ 2023-03-22 14:56 UTC (permalink / raw
To: gentoo-commits
commit: 8b5ce5c1066e797f6cbf5abb21bd1dfe41d897eb
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Wed Mar 22 14:56:19 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed Mar 22 14:56:19 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8b5ce5c1
dev-python/hdmf: treeclean and rm deprecated commented lines
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/hdmf/files/hdmf-3.1.1-versions.patch | 21 ----------------
dev-python/hdmf/hdmf-3.3.2-r1.ebuild | 32 -------------------------
dev-python/hdmf/hdmf-3.4.7.ebuild | 4 ----
dev-python/hdmf/hdmf-3.5.1.ebuild | 4 ----
4 files changed, 61 deletions(-)
diff --git a/dev-python/hdmf/files/hdmf-3.1.1-versions.patch b/dev-python/hdmf/files/hdmf-3.1.1-versions.patch
deleted file mode 100644
index 58822989d..000000000
--- a/dev-python/hdmf/files/hdmf-3.1.1-versions.patch
+++ /dev/null
@@ -1,21 +0,0 @@
---- a/setup.py 2022-01-31 02:48:24.645837186 -0500
-+++ b/setup.py 2022-01-31 02:49:55.066949247 -0500
-@@ -12,12 +12,12 @@
- schema_dir = 'common/hdmf-common-schema/common'
-
- reqs = [
-- 'h5py>=2.10,<4',
-- 'numpy>=1.16,<1.22',
-- 'scipy>=1.1,<2',
-- 'pandas>=1.0.5,<2',
-- 'ruamel.yaml>=0.16,<1',
-- 'jsonschema>=2.6.0,<4',
-+ 'h5py',
-+ 'numpy',
-+ 'scipy',
-+ 'pandas',
-+ 'ruamel.yaml',
-+ 'jsonschema',
- 'setuptools',
- ]
-
diff --git a/dev-python/hdmf/hdmf-3.3.2-r1.ebuild b/dev-python/hdmf/hdmf-3.3.2-r1.ebuild
deleted file mode 100644
index 0efdd8f92..000000000
--- a/dev-python/hdmf/hdmf-3.3.2-r1.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-inherit distutils-r1
-
-DESCRIPTION="The Hierarchical Data Modeling Framework"
-HOMEPAGE="https://github.com/hdmf-dev/hdmf"
-SRC_URI="https://github.com/hdmf-dev/hdmf/releases/download/${PV}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/jsonschema[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/ruamel-yaml[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- "
-BDEPEND=""
-
-PATCHES=(
- "${FILESDIR}/${P}-versions.patch"
-)
-
-distutils_enable_tests pytest
diff --git a/dev-python/hdmf/hdmf-3.4.7.ebuild b/dev-python/hdmf/hdmf-3.4.7.ebuild
index 2d05ea71a..883b5b95b 100644
--- a/dev-python/hdmf/hdmf-3.4.7.ebuild
+++ b/dev-python/hdmf/hdmf-3.4.7.ebuild
@@ -25,8 +25,4 @@ RDEPEND="
"
BDEPEND=""
-#PATCHES=(
-# "${FILESDIR}/${P}-versions.patch"
-#)
-
distutils_enable_tests pytest
diff --git a/dev-python/hdmf/hdmf-3.5.1.ebuild b/dev-python/hdmf/hdmf-3.5.1.ebuild
index 2d05ea71a..883b5b95b 100644
--- a/dev-python/hdmf/hdmf-3.5.1.ebuild
+++ b/dev-python/hdmf/hdmf-3.5.1.ebuild
@@ -25,8 +25,4 @@ RDEPEND="
"
BDEPEND=""
-#PATCHES=(
-# "${FILESDIR}/${P}-versions.patch"
-#)
-
distutils_enable_tests pytest
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