[gentoo-commits] proj/sci:master commit in: sci-biology/longstitch/

[gentoo-commits] proj/sci:master commit in: sci-biology/longstitch/

[Martin Mokrejs]

commit:     4f86aedbcbd2669eb91f62364c7661a384629e11
Author:     Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Mon Oct 18 11:25:09 2021 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Oct 18 11:25:09 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=4f86aedb

sci-biology/longstitch: new package

A simple Makefile to run all the dependencies at once.

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>

 sci-biology/longstitch/longstitch-1.0.1.ebuild | 28 ++++++++++++++++++++++++++
 sci-biology/longstitch/metadata.xml            | 12 +++++++++++
 2 files changed, 40 insertions(+)

diff --git a/sci-biology/longstitch/longstitch-1.0.1.ebuild b/sci-biology/longstitch/longstitch-1.0.1.ebuild
new file mode 100644
index 000000000..787c3219b
--- /dev/null
+++ b/sci-biology/longstitch/longstitch-1.0.1.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads"
+HOMEPAGE="https://github.com/bcgsc/LongStitch"
+SRC_URI="https://github.com/bcgsc/LongStitch/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+RESTRICT="test"
+
+RDEPEND="
+	sci-biology/abyss
+	sci-biology/tigmint
+	sci-biology/LINKS
+	sci-biology/samtools
+"
+
+S="${WORKDIR}"/LongStitch-"${PV}"
+
+src_install(){
+	dobin longstitch
+	dodoc README.md LongStitch_overview.pdf
+}

diff --git a/sci-biology/longstitch/metadata.xml b/sci-biology/longstitch/metadata.xml
new file mode 100644
index 000000000..138cb7705
--- /dev/null
+++ b/sci-biology/longstitch/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/longstitch/

[Andrew Ammerlaan]

commit:     a4e41f998422ae78af4f26416f4c4a0239ddf1be
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 30 13:24:23 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Nov 30 13:24:23 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a4e41f99

sci-biology/longstitch: drpp keywords, keywords on LINKS dropped

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/longstitch/longstitch-1.0.1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/longstitch/longstitch-1.0.1.ebuild b/sci-biology/longstitch/longstitch-1.0.1.ebuild
index 787c3219b..6cd035d86 100644
--- a/sci-biology/longstitch/longstitch-1.0.1.ebuild
+++ b/sci-biology/longstitch/longstitch-1.0.1.ebuild
@@ -9,7 +9,7 @@ SRC_URI="https://github.com/bcgsc/LongStitch/archive/refs/tags/v${PV}.tar.gz ->
 
 LICENSE="GPL-3"
 SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS=""
 
 RESTRICT="test"
 

[gentoo-commits] proj/sci:master commit in: sci-biology/longstitch/

[Andrew Ammerlaan]

commit:     0249946944e297c609b8cec2586fdeb9c3639c9a
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jan 25 13:32:08 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 25 13:32:08 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=02499469

sci-biology/longstitch: add keywords

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/longstitch/longstitch-1.0.1.ebuild | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/sci-biology/longstitch/longstitch-1.0.1.ebuild b/sci-biology/longstitch/longstitch-1.0.1.ebuild
index 6cd035d86..b14bdee87 100644
--- a/sci-biology/longstitch/longstitch-1.0.1.ebuild
+++ b/sci-biology/longstitch/longstitch-1.0.1.ebuild
@@ -1,15 +1,16 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
 DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads"
 HOMEPAGE="https://github.com/bcgsc/LongStitch"
 SRC_URI="https://github.com/bcgsc/LongStitch/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}/LongStitch-${PV}"
 
 LICENSE="GPL-3"
 SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
 
 RESTRICT="test"
 
@@ -20,8 +21,6 @@ RDEPEND="
 	sci-biology/samtools
 "
 
-S="${WORKDIR}"/LongStitch-"${PV}"
-
 src_install(){
 	dobin longstitch
 	dodoc README.md LongStitch_overview.pdf