From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id BFD6A158086 for ; Sun, 17 Oct 2021 15:42:54 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id F403EE0823; Sun, 17 Oct 2021 15:42:53 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-CHACHA20-POLY1305 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id D7BBAE0823 for ; Sun, 17 Oct 2021 15:42:53 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-CHACHA20-POLY1305 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id BC3993434C2 for ; Sun, 17 Oct 2021 15:42:52 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 358F8EA for ; Sun, 17 Oct 2021 15:42:51 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1634485363.f4a311c42b306a1a49fa91c28203f388d324d326.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/LINKS/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/LINKS/LINKS-1.8.7.ebuild sci-biology/LINKS/metadata.xml X-VCS-Directories: sci-biology/LINKS/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: f4a311c42b306a1a49fa91c28203f388d324d326 X-VCS-Branch: master Date: Sun, 17 Oct 2021 15:42:51 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 0373cdcb-6ebe-41a1-8439-a82d92c34bca X-Archives-Hash: 62eca0928eb253d97cdd3f0f76e6eb71 commit: f4a311c42b306a1a49fa91c28203f388d324d326 Author: Martin Mokrejs gmail com> AuthorDate: Sun Oct 17 15:42:43 2021 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sun Oct 17 15:42:43 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f4a311c4 sci-biology/LINKS: new package The LINKS perl script probably needs some sed hackery to eventually start using system-wide btl_bloomfilter file BloomFilter.i and also perl's CORE/EXTERN.h. Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Martin Mokrejs gmail.com> sci-biology/LINKS/LINKS-1.8.7.ebuild | 25 +++++++++++++++++++++++++ sci-biology/LINKS/metadata.xml | 12 ++++++++++++ 2 files changed, 37 insertions(+) diff --git a/sci-biology/LINKS/LINKS-1.8.7.ebuild b/sci-biology/LINKS/LINKS-1.8.7.ebuild new file mode 100644 index 000000000..e9cf2fbd8 --- /dev/null +++ b/sci-biology/LINKS/LINKS-1.8.7.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads" +HOMEPAGE="https://github.com/bcgsc/LINKS" +SRC_URI="https://github.com/bcgsc/LINKS/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +RESTRICT="test" + +RDEPEND=" + >=dev-lang/perl-1.6 + dev-lang/swig + sci-biology/btl_bloomfilter +" + +src_install(){ + dobin bin/LINKS *.pl tools/*.pl + dodoc README.md +} diff --git a/sci-biology/LINKS/metadata.xml b/sci-biology/LINKS/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/LINKS/metadata.xml @@ -0,0 +1,12 @@ + + + + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + + sci-biology@gentoo.org + Gentoo Biology Project + +