[gentoo-commits] proj/sci:master commit in: profiles/, sci-chemistry/talosn/

[gentoo-commits] proj/sci:master commit in: profiles/, sci-chemistry/talosn/

[Andrew Ammerlaan]

commit:     e97b1a4d5fa82dd7d9e03ad46cc4aca4c1d52eb8
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 31 09:23:41 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Aug 31 09:23:41 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e97b1a4d

sci-chemistry/talosn: remove last-rited pack

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 profiles/package.mask                              |  9 ---
 sci-chemistry/talosn/metadata.xml                  |  8 ---
 .../talosn/talosn-4.12.2015.147.15.40.ebuild       | 68 ----------------------
 3 files changed, 85 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 789da8f84..d39812beb 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -29,12 +29,3 @@
 ## app-misc/some-package
 
 #--- END OF EXAMPLES ---
-
-# Andrew Ammerlaan <andrewammerlaan@gentoo.org> (02 Aug 2021)
-# These packages depend on ncbi-tools which is being removed from ::gentoo:
-# Last release 10 years ago, EOL upstream, no other distro packages this
-# anymore, tons of bugs. Revdeps are unmaintained too and out of date.
-# Bug #798015, removal in 30 days.
-# Perhaps these packages work with the newer ncbi-tools++? If anyone is actively
-# using these packages please open a bug report
-sci-chemistry/talosn

diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml
deleted file mode 100644
index da36ecbfc..000000000
--- a/sci-chemistry/talosn/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-chemistry@gentoo.org</email>
-		<name>Gentoo Chemistry Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
deleted file mode 100644
index 1fbcea875..000000000
--- a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
+++ /dev/null
@@ -1,68 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit java-pkg-opt-2
-
-DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts"
-HOMEPAGE="https://spin.niddk.nih.gov/bax/software/TALOS-N/"
-SRC_URI="https://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
-
-SLOT="0"
-LICENSE="all-rights-reserved"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-DEPEND=">=virtual/jre-1.5:*"
-RDEPEND="${DEPEND}
-	app-shells/tcsh
-	sci-biology/ncbi-tools"
-
-S="${WORKDIR}"
-
-QA_PREBUILT="/opt/.*"
-
-src_prepare() {
-	default
-	local s64
-	use amd64 || s64="_x64"
-	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
-
-	sed \
-		-e '/setenv TALOSN_DIR/d' \
-		-e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
-		-e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
-		-i talosn_ss || die
-}
-
-src_install() {
-	local TALOSN="/opt/${PN}"
-	exeinto ${TALOSN}/bin
-	doexe bin/*
-
-	exeinto ${TALOSN}/com
-	doexe com/*
-
-	exeinto /opt/bin
-	doexe talosn{,_ss}
-
-	insinto ${TALOSN}
-	doins -r tab
-
-	java-pkg_jarinto ${TALOSN}
-	java-pkg_dojar rama.jar
-
-	java-pkg_dolauncher jrama --jar rama.jar -into /opt/
-
-	if use examples; then
-		insinto /usr/share/${PN}
-		doins -r demo
-	fi
-
-	cat >> "${T}"/40talosn <<- EOF
-	TALOSN_DIR="${EPREFIX}/${TALOSN}"
-	#BLASTDB=
-	EOF
-	doenvd "${T}"/40talosn
-}