[gentoo-commits] proj/sci:master commit in: sci-biology/rum/, profiles/

[gentoo-commits] proj/sci:master commit in: sci-biology/rum/, profiles/

[Andrew Ammerlaan]

commit:     404741c6b93fd5423b3e3d7488d093b361953a99
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 31 09:21:13 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Aug 31 09:21:13 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=404741c6

sci-biology/rum: remove last-rited pack

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 profiles/package.mask               |  2 --
 sci-biology/rum/metadata.xml        | 15 ---------------
 sci-biology/rum/rum-2.0.5.06.ebuild | 30 ------------------------------
 3 files changed, 47 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 6b58c272e..789da8f84 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -38,5 +38,3 @@
 # Perhaps these packages work with the newer ncbi-tools++? If anyone is actively
 # using these packages please open a bug report
 sci-chemistry/talosn
-# revdep of seqclean
-sci-biology/rum

diff --git a/sci-biology/rum/metadata.xml b/sci-biology/rum/metadata.xml
deleted file mode 100644
index 032147c48..000000000
--- a/sci-biology/rum/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="github">itmat/rum</remote-id>
-	</upstream>
-</pkgmetadata>

diff --git a/sci-biology/rum/rum-2.0.5.06.ebuild b/sci-biology/rum/rum-2.0.5.06.ebuild
deleted file mode 100644
index 7234c72e7..000000000
--- a/sci-biology/rum/rum-2.0.5.06.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit perl-module
-
-DESCRIPTION="RNA-Seq Unified Mapper (digital normalization)"
-HOMEPAGE="https://github.com/itmat/rum/wiki"
-SRC_URI="https://github.com/itmat/rum/archive/v$(ver_rs 3-4 _).tar.gz -> ${P}.tar.gz"
-
-LICENSE="UPennState"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="
-	dev-perl/Log-Log4perl
-	virtual/perl-autodie"
-RDEPEND="${DEPEND}
-	sci-biology/seqclean
-	sci-biology/blat
-	sci-biology/bowtie
-	sci-biology/seqclean"
-
-S="${WORKDIR}/${PN}-$(ver_rs 3-4 _)"
-
-src_install(){
-	default
-	rm "${ED}"/usr/lib64/perl5/vendor_perl/*/RUM/{bowtie,blat,mdust} ]] || die
-}