[gentoo-commits] repo/gentoo:master commit in: sys-cluster/openmpi/

["Joonas Niilola" <juippis@gentoo.org>]

commit:     b348e7c16cffa197e2592cfbf89666d603e5a346
Author:     Alessandro Barbieri <lssndrbarbieri <AT> gmail <DOT> com>
AuthorDate: Wed Apr 21 01:25:08 2021 +0000
Commit:     Joonas Niilola <juippis <AT> gentoo <DOT> org>
CommitDate: Tue Jun 15 13:03:05 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b348e7c1

sys-cluster/openmpi: add peruse and libompitrace useflags

Closes: https://bugs.gentoo.org/784278
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: Alessandro Barbieri <lssndrbarbieri <AT> gmail.com>
Closes: https://github.com/gentoo/gentoo/pull/20480
Signed-off-by: Joonas Niilola <juippis <AT> gentoo.org>

 sys-cluster/openmpi/metadata.xml            |   6 +-
 sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild | 176 ++++++++++++++++++++++++++++
 2 files changed, 180 insertions(+), 2 deletions(-)

diff --git a/sys-cluster/openmpi/metadata.xml b/sys-cluster/openmpi/metadata.xml
index e319ff476a1..32314bce38b 100644
--- a/sys-cluster/openmpi/metadata.xml
+++ b/sys-cluster/openmpi/metadata.xml
@@ -10,10 +10,12 @@
 		<flag name="cuda">Add GPU direct support</flag>
 		<flag name="heterogeneous">Enable features required for heterogeneous
 		platform support</flag>
-		<flag name="romio">Build the ROMIO MPI-IO component</flag>
+		<flag name="libompitrace">Enable support for contributed package libompitrace</flag>
 		<flag name="mpi-threads">Enable MPI_THREAD_MULTIPLE</flag>
 		<flag name="numa">Enable numactl to allow binding processes to CPUs</flag>
-		<flag name="vt">Enable bundled VampirTrace support</flag>
 		<flag name="pbs">Add support for the Portable Batch System (PBS)</flag>
+		<flag name="peruse">Enable PERUSE interface</flag>
+		<flag name="romio">Build the ROMIO MPI-IO component</flag>
+		<flag name="vt">Enable bundled VampirTrace support</flag>
 	</use>
 </pkgmetadata>

diff --git a/sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild
new file mode 100644
index 00000000000..e044b27efaa
--- /dev/null
+++ b/sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild
@@ -0,0 +1,176 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+FORTRAN_NEEDED=fortran
+
+inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib multilib-minimal
+
+MY_P=${P/-mpi}
+S=${WORKDIR}/${MY_P}
+
+IUSE_OPENMPI_FABRICS="
+	openmpi_fabrics_ofed
+	openmpi_fabrics_knem
+	openmpi_fabrics_psm"
+
+IUSE_OPENMPI_RM="
+	openmpi_rm_pbs
+	openmpi_rm_slurm"
+
+IUSE_OPENMPI_OFED_FEATURES="
+	openmpi_ofed_features_control-hdr-padding
+	openmpi_ofed_features_udcm
+	openmpi_ofed_features_rdmacm
+	openmpi_ofed_features_dynamic-sl"
+
+DESCRIPTION="A high-performance message passing library (MPI)"
+HOMEPAGE="https://www.open-mpi.org"
+SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux"
+IUSE="cma cuda cxx fortran heterogeneous ipv6 java +libompitrace peruse romio
+	${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
+
+REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
+	openmpi_rm_pbs? ( !openmpi_rm_slurm )
+	openmpi_fabrics_psm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )"
+
+CDEPEND="
+	!sys-cluster/mpich
+	!sys-cluster/mpich2
+	!sys-cluster/nullmpi
+	>=dev-libs/libevent-2.0.22:=[${MULTILIB_USEDEP},threads]
+	dev-libs/libltdl:0[${MULTILIB_USEDEP}]
+	>=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP}]
+	>=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}]
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= )
+	openmpi_fabrics_ofed? ( || ( sys-cluster/rdma-core sys-fabric/ofed:* ) )
+	openmpi_fabrics_knem? ( sys-cluster/knem )
+	openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* )
+	openmpi_rm_pbs? ( sys-cluster/torque )
+	openmpi_rm_slurm? ( sys-cluster/slurm )
+	openmpi_ofed_features_rdmacm? ( || ( sys-cluster/rdma-core sys-fabric/librdmacm:* ) )"
+
+RDEPEND="${CDEPEND}
+	java? ( >=virtual/jre-1.6 )"
+
+DEPEND="${CDEPEND}
+	java? ( >=virtual/jdk-1.6 )"
+
+MULTILIB_WRAPPED_HEADERS=(
+	/usr/include/mpi.h
+	/usr/include/openmpi/ompi/mpi/java/mpiJava.h
+)
+
+pkg_setup() {
+	fortran-2_pkg_setup
+	java-pkg-opt-2_pkg_setup
+
+	elog
+	elog "OpenMPI has an overwhelming count of configuration options."
+	elog "Don't forget the EXTRA_ECONF environment variable can let you"
+	elog "specify configure options if you find them necessary."
+	elog
+}
+
+src_prepare() {
+	default
+
+	# Necessary for scalibility, see
+	# http://www.open-mpi.org/community/lists/users/2008/09/6514.php
+	echo 'oob_tcp_listen_mode = listen_thread' \
+		>> opal/etc/openmpi-mca-params.conf || die
+}
+
+multilib_src_configure() {
+	if use java; then
+		# We must always build with the right -source and -target
+		# flags. Passing flags to javac isn't explicitly supported here
+		# but we can cheat by overriding the configure test for javac.
+		export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)"
+	fi
+
+	local myconf=(
+		--enable-mpi-fortran=$(usex fortran all no)
+		--enable-orterun-prefix-by-default
+		--enable-pretty-print-stacktrace
+
+		--sysconfdir="${EPREFIX}/etc/${PN}"
+
+		--with-hwloc="${EPREFIX}/usr"
+		--with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)"
+		--with-libltdl="${EPREFIX}/usr"
+		--with-libevent="${EPREFIX}/usr"
+		--with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)"
+
+		$(use_enable cxx mpi-cxx)
+		$(use_enable heterogeneous)
+		$(use_enable ipv6)
+		$(use_enable libompitrace)
+		$(use_enable peruse)
+		$(use_enable romio io-romio)
+
+		$(use_with cma)
+
+		$(multilib_native_use_enable java mpi-java)
+		$(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding)
+		$(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm)
+		$(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm)
+		$(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl)
+
+		$(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda)
+		$(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr)
+		$(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr)
+		$(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr)
+		$(multilib_native_use_with openmpi_rm_pbs tm)
+		$(multilib_native_use_with openmpi_rm_slurm slurm)
+	)
+	ECONF_SOURCE=${S} econf "${myconf[@]}"
+}
+
+multilib_src_test() {
+	# Doesn't work with the default src_test as the dry run (-n) fails.
+	emake -j1 check
+}
+
+multilib_src_install() {
+	default
+
+	# fortran header cannot be wrapped (bug #540508), workaround part 1
+	if multilib_is_native_abi && use fortran; then
+		mkdir "${T}"/fortran || die
+		mv "${ED}"/usr/include/mpif* "${T}"/fortran || die
+	else
+		# some fortran files get installed unconditionally
+		rm \
+			"${ED}"/usr/include/mpif* \
+			"${ED}"/usr/bin/mpif* \
+			|| die
+	fi
+}
+
+multilib_src_install_all() {
+	# fortran header cannot be wrapped (bug #540508), workaround part 2
+	if use fortran; then
+		mv "${T}"/fortran/mpif* "${ED}"/usr/include || die
+	fi
+
+	# Remove la files, no static libs are installed and we have pkg-config
+	find "${ED}" -name '*.la' -delete || die
+
+	if use java; then
+		local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar
+		java-pkg_dojar "${mpi_jar}"
+		# We don't want to install the jar file twice
+		# so let's clean after ourselves.
+		rm "${mpi_jar}" || die
+	fi
+	einstalldocs
+}