[gentoo-commits] repo/proj/guru:dev commit in: sci-biology/geneathome/

[gentoo-commits] repo/proj/guru:dev commit in: sci-biology/geneathome/

[Anna Vyalkova]

commit:     9416908e00d4d16ddc42a5e138b4fbbf65e467bc
Author:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Sat May 22 18:02:36 2021 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Sat May 22 19:06:52 2021 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=9416908e

sci-biology/geneathome: fix unpack

Closes: https://bugs.gentoo.org/791409
Signed-off-by: Anna Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/geneathome/geneathome-1.10.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/geneathome/geneathome-1.10.ebuild b/sci-biology/geneathome/geneathome-1.10.ebuild
index 10a169916..1c7b336d6 100644
--- a/sci-biology/geneathome/geneathome-1.10.ebuild
+++ b/sci-biology/geneathome/geneathome-1.10.ebuild
@@ -15,7 +15,7 @@ DESCRIPTION="BOINC application for expanding Gene Regulatory Networks (GRN)"
 HOMEPAGE="http://gene.disi.unitn.it/test/genehome https://bitbucket.org/francesco-asnicar/pc-boinc"
 SRC_URI="https://github.com/BOINC/boinc/archive/client_release/${BOINC_RELEASE}/${BOINC_VER}.tar.gz -> boinc-${BOINC_VER}.tar.gz
 	https://bitbucket.org/francesco-asnicar/${MY_PN}/get/${COMMIT}.tar.gz -> ${P}.tar.gz"
-S="${WORKDIR}/boinc-client_release-${BOINC_RELEASE}-${BOINC_VER}/samples/francesco-asnicar-${MY_PN}-${COMMIT}"
+S="${WORKDIR}/boinc-client_release-${BOINC_RELEASE}-${BOINC_VER}/samples/${PN}"
 
 LICENSE="sunpro public-domain"
 SLOT="0"
@@ -34,7 +34,7 @@ DOCS=( Readme.md )
 
 src_unpack() {
 	default
-	mv "${WORKDIR}/francesco-asnicar-${MY_PN}-${COMMIT}" "${S}" || die
+	mv "${WORKDIR}"/francesco-asnicar-* "${S}" || die
 }
 
 src_prepare() {

[gentoo-commits] repo/proj/guru:dev commit in: sci-biology/geneathome/

[Anna Vyalkova]

commit:     ebfbbbfb7472a0b6e67e5630f1da90e074158e55
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Thu Jul 22 08:13:47 2021 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Thu Jul 22 08:27:40 2021 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=ebfbbbfb

sci-biology/geneathome: revbump (new eclass)

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/geneathome/geneathome-1.10-r1.ebuild | 59 ++++++++++++++++++++++++
 1 file changed, 59 insertions(+)

diff --git a/sci-biology/geneathome/geneathome-1.10-r1.ebuild b/sci-biology/geneathome/geneathome-1.10-r1.ebuild
new file mode 100644
index 000000000..26315147c
--- /dev/null
+++ b/sci-biology/geneathome/geneathome-1.10-r1.ebuild
@@ -0,0 +1,59 @@
+# Copyright 2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+BOINC_MASTER_URL="https://gene.disi.unitn.it/test/"
+BOINC_INVITATION_CODE="science@tn"
+BOINC_HELPTEXT=\
+"gene@home is a part of TN-Grid BOINC project."
+
+inherit boinc boinc-app toolchain-funcs
+
+MY_PN="pc-boinc"
+COMMIT="3186afba409a"
+
+DESCRIPTION="BOINC application for expanding Gene Regulatory Networks (GRN)"
+HOMEPAGE+=" https://bitbucket.org/francesco-asnicar/pc-boinc"
+SRC_URI="https://bitbucket.org/francesco-asnicar/${MY_PN}/get/${COMMIT}.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}/francesco-asnicar-pc-boinc-${COMMIT}"
+
+LICENSE="sunpro public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+DEPEND="app-arch/bzip2"
+RDEPEND="${DEPEND}"
+
+PATCHES=( "${FILESDIR}"/makefile.patch )
+
+DOCS=( Readme.md )
+
+boinc-app_add_deps
+
+src_prepare() {
+	default
+
+	# error: inlining failed in call to ‘always_inline’ ‘int fprintf(FILE*, const char*, ...)’: target specific option mismatch
+	sed  -i src/main.cpp \
+		-e 's/stdio.h/iostream/' \
+		-e 's/fprintf(stderr, \(.*\))/std::cerr << \1/g' || die
+}
+
+src_compile() {
+	tc-export CC CXX
+	emake BOINC_DIR=/usr/include/boinc -C src
+}
+
+src_test() {
+	bash ./test_run.sh || die
+	bash ./test_run2.sh || die
+}
+
+src_install() {
+	doappinfo "${FILESDIR}"/app_info.xml
+
+	exeinto $(get_project_root)
+	exeopts -m 0755 --owner boinc --group boinc
+	newexe bin/pc "gene_pcim_v${PV}"
+}

[gentoo-commits] repo/proj/guru:dev commit in: sci-biology/geneathome/

[Anna Vyalkova]

commit:     01a79910e0f3a02a28cb1370b18fb59f58b7c035
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Sun Jul 25 18:10:25 2021 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Sun Jul 25 18:14:26 2021 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=01a79910

sci-biology/geneathome: require in-source build

config.h was present somehow in my /usr/include/boinc so I didn't notice
the bug. Should be fixed now.

Closes: https://bugs.gentoo.org/803893
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 .../{geneathome-1.10-r1.ebuild => geneathome-1.10-r2.ebuild}   | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/sci-biology/geneathome/geneathome-1.10-r1.ebuild b/sci-biology/geneathome/geneathome-1.10-r2.ebuild
similarity index 88%
rename from sci-biology/geneathome/geneathome-1.10-r1.ebuild
rename to sci-biology/geneathome/geneathome-1.10-r2.ebuild
index 26315147c..43ec78723 100644
--- a/sci-biology/geneathome/geneathome-1.10-r1.ebuild
+++ b/sci-biology/geneathome/geneathome-1.10-r2.ebuild
@@ -3,6 +3,7 @@
 
 EAPI=8
 
+BOINC_SUBMODULE="samples/${PN}"
 BOINC_MASTER_URL="https://gene.disi.unitn.it/test/"
 BOINC_INVITATION_CODE="science@tn"
 BOINC_HELPTEXT=\
@@ -16,7 +17,7 @@ COMMIT="3186afba409a"
 DESCRIPTION="BOINC application for expanding Gene Regulatory Networks (GRN)"
 HOMEPAGE+=" https://bitbucket.org/francesco-asnicar/pc-boinc"
 SRC_URI="https://bitbucket.org/francesco-asnicar/${MY_PN}/get/${COMMIT}.tar.gz -> ${P}.tar.gz"
-S="${WORKDIR}/francesco-asnicar-pc-boinc-${COMMIT}"
+BOINC_S="francesco-asnicar-${MY_PN}-${COMMIT}"
 
 LICENSE="sunpro public-domain"
 SLOT="0"
@@ -31,8 +32,11 @@ DOCS=( Readme.md )
 
 boinc-app_add_deps
 
+boinc_require_source 7.16.16
+boinc_enable_autotools
+
 src_prepare() {
-	default
+	boinc_src_prepare
 
 	# error: inlining failed in call to ‘always_inline’ ‘int fprintf(FILE*, const char*, ...)’: target specific option mismatch
 	sed  -i src/main.cpp \
@@ -42,7 +46,7 @@ src_prepare() {
 
 src_compile() {
 	tc-export CC CXX
-	emake BOINC_DIR=/usr/include/boinc -C src
+	emake -C src
 }
 
 src_test() {

[gentoo-commits] repo/proj/guru:dev commit in: sci-biology/geneathome/

[Anna Vyalkova]

commit:     f5919bf155f1797d8b0959cfffeda9444cc69b89
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Mon May 30 15:21:44 2022 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Mon May 30 17:46:55 2022 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=f5919bf1

sci-biology/geneathome: drop 1.10

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/geneathome/geneathome-1.10.ebuild | 78 ---------------------------
 1 file changed, 78 deletions(-)

diff --git a/sci-biology/geneathome/geneathome-1.10.ebuild b/sci-biology/geneathome/geneathome-1.10.ebuild
deleted file mode 100644
index 1c7b336d6..000000000
--- a/sci-biology/geneathome/geneathome-1.10.ebuild
+++ /dev/null
@@ -1,78 +0,0 @@
-# Copyright 2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools toolchain-funcs
-
-MY_PN="pc-boinc"
-COMMIT="3186afba409a"
-
-BOINC_VER=7.16.16
-BOINC_RELEASE=$(ver_cut 1-2 "${BOINC_VER}")
-
-DESCRIPTION="BOINC application for expanding Gene Regulatory Networks (GRN)"
-HOMEPAGE="http://gene.disi.unitn.it/test/genehome https://bitbucket.org/francesco-asnicar/pc-boinc"
-SRC_URI="https://github.com/BOINC/boinc/archive/client_release/${BOINC_RELEASE}/${BOINC_VER}.tar.gz -> boinc-${BOINC_VER}.tar.gz
-	https://bitbucket.org/francesco-asnicar/${MY_PN}/get/${COMMIT}.tar.gz -> ${P}.tar.gz"
-S="${WORKDIR}/boinc-client_release-${BOINC_RELEASE}-${BOINC_VER}/samples/${PN}"
-
-LICENSE="sunpro public-domain"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="
-	app-arch/bzip2
-	sci-misc/boinc
-"
-RDEPEND="${DEPEND}"
-BDEPEND=""
-
-PATCHES=( "${FILESDIR}"/makefile.patch )
-
-DOCS=( Readme.md )
-
-src_unpack() {
-	default
-	mv "${WORKDIR}"/francesco-asnicar-* "${S}" || die
-}
-
-src_prepare() {
-	default
-	sed 's/stdio.h/iostream/' -i src/main.cpp || die
-	sed 's/fprintf(stderr, \(.*\))/std::cerr << \1/g' -i src/main.cpp || die
-
-	cd ../.. || die
-	eautoreconf
-}
-
-src_configure() {
-	cd ../.. || die
-	econf --enable-pkg-devel --disable-static
-}
-
-src_compile() {
-	tc-export CC CXX
-	cd src || die
-	emake
-}
-
-src_test() {
-	bash test_run.sh || die
-	bash test_run2.sh || die
-}
-
-src_install() {
-	insinto /var/lib/boinc/projects/gene.disi.unitn.it_test
-	doins "${FILESDIR}"/app_info.xml
-	exeinto /var/lib/boinc/projects/gene.disi.unitn.it_test
-	newexe bin/pc "gene_pcim_v${PV}"
-}
-
-pkg_postinst() {
-	elog
-	elog "gene@home is a part of TN-Grid BOINC project."
-	elog
-	elog "- Master URL: https://gene.disi.unitn.it/test/"
-	elog "- Invitation code: science@tn"
-}