* [gentoo-commits] repo/gentoo:master commit in: sci-biology/kallisto/
@ 2017-11-16 13:17 David Seifert
0 siblings, 0 replies; 5+ messages in thread
From: David Seifert @ 2017-11-16 13:17 UTC (permalink / raw
To: gentoo-commits
commit: 3dcd860e419d637e622ff61ee6f0acec2916e7d7
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 16 13:15:49 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Nov 16 13:16:56 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3dcd860e
sci-biology/kallisto: Initial addition
Closes: https://github.com/gentoo/sci/pull/814
Package-Manager: Portage-2.3.14, Repoman-2.3.6
sci-biology/kallisto/Manifest | 1 +
sci-biology/kallisto/kallisto-0.43.1.ebuild | 25 +++++++++++++++++++++++++
sci-biology/kallisto/kallisto-9999.ebuild | 25 +++++++++++++++++++++++++
sci-biology/kallisto/metadata.xml | 19 +++++++++++++++++++
4 files changed, 70 insertions(+)
diff --git a/sci-biology/kallisto/Manifest b/sci-biology/kallisto/Manifest
new file mode 100644
index 00000000000..7cb0b257593
--- /dev/null
+++ b/sci-biology/kallisto/Manifest
@@ -0,0 +1 @@
+DIST kallisto-0.43.1.tar.gz 1067076 SHA256 2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e SHA512 c7725a2d649cf96fcd24a20d542b409777cfd9fe97c09f0f459a5ec2981e0a4f5f0ea03d76d3ec3edf0e498c799fc7d074d442d5e35ddb4043d1f7634619dda8 WHIRLPOOL a0f8c2cab5afa3df7cf7f540319d32a99d698ac50e4574c941972fff789e9d8e258124153d16a777180595b201d91e240e5ffd17994cc2571e71f6fcb47fdeee
diff --git a/sci-biology/kallisto/kallisto-0.43.1.ebuild b/sci-biology/kallisto/kallisto-0.43.1.ebuild
new file mode 100644
index 00000000000..0020e891a03
--- /dev/null
+++ b/sci-biology/kallisto/kallisto-0.43.1.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils
+
+DESCRIPTION="Near-optimal RNA-Seq quantification"
+HOMEPAGE="http://pachterlab.github.io/kallisto/"
+
+if [[ ${PV} == *9999 ]]; then
+ inherit git-r3
+ EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
+else
+ SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+fi
+
+LICENSE="BSD"
+SLOT="0"
+
+RDEPEND="
+ sci-libs/hdf5:=
+ sys-libs/zlib:="
+DEPEND="${RDEPEND}"
diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild
new file mode 100644
index 00000000000..0020e891a03
--- /dev/null
+++ b/sci-biology/kallisto/kallisto-9999.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit cmake-utils
+
+DESCRIPTION="Near-optimal RNA-Seq quantification"
+HOMEPAGE="http://pachterlab.github.io/kallisto/"
+
+if [[ ${PV} == *9999 ]]; then
+ inherit git-r3
+ EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
+else
+ SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+fi
+
+LICENSE="BSD"
+SLOT="0"
+
+RDEPEND="
+ sci-libs/hdf5:=
+ sys-libs/zlib:="
+DEPEND="${RDEPEND}"
diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml
new file mode 100644
index 00000000000..aba0d0ebf33
--- /dev/null
+++ b/sci-biology/kallisto/metadata.xml
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mschu.dev@gmail.com</email>
+ <name>Michael Schubert</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>proxy-maint@gentoo.org</email>
+ <name>Proxy Maintainers</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+ <upstream>
+ <remote-id type="github">pachterlab/kallisto</remote-id>
+ </upstream>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/kallisto/
@ 2020-04-14 8:35 Joonas Niilola
0 siblings, 0 replies; 5+ messages in thread
From: Joonas Niilola @ 2020-04-14 8:35 UTC (permalink / raw
To: gentoo-commits
commit: 790a8fbf62c598cbbe2e415d86a1d4c14db0fef2
Author: Joonas Niilola <juippis <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 14 08:03:46 2020 +0000
Commit: Joonas Niilola <juippis <AT> gentoo <DOT> org>
CommitDate: Tue Apr 14 08:34:32 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=790a8fbf
sci-biology/kallisto: drop inactive maintainer
Closes: https://bugs.gentoo.org/643652
Signed-off-by: Joonas Niilola <juippis <AT> gentoo.org>
sci-biology/kallisto/metadata.xml | 8 --------
1 file changed, 8 deletions(-)
diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml
index aba0d0ebf33..03ad8ef865a 100644
--- a/sci-biology/kallisto/metadata.xml
+++ b/sci-biology/kallisto/metadata.xml
@@ -1,14 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer type="person">
- <email>mschu.dev@gmail.com</email>
- <name>Michael Schubert</name>
- </maintainer>
- <maintainer type="project">
- <email>proxy-maint@gentoo.org</email>
- <name>Proxy Maintainers</name>
- </maintainer>
<maintainer type="project">
<email>sci-biology@gentoo.org</email>
<name>Gentoo Biology Project</name>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/kallisto/
@ 2021-05-08 14:15 David Seifert
0 siblings, 0 replies; 5+ messages in thread
From: David Seifert @ 2021-05-08 14:15 UTC (permalink / raw
To: gentoo-commits
commit: 06fc538689feab7fb91e62f619cfdc213074e8e3
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat May 8 14:14:57 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat May 8 14:14:57 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=06fc5386
sci-biology/kallisto: Remove old 0.43.1
Closes: https://bugs.gentoo.org/696504
Closes: https://bugs.gentoo.org/708658
Closes: https://bugs.gentoo.org/788427
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/kallisto/Manifest | 1 -
sci-biology/kallisto/kallisto-0.43.1.ebuild | 25 -------------------------
2 files changed, 26 deletions(-)
diff --git a/sci-biology/kallisto/Manifest b/sci-biology/kallisto/Manifest
index 85d85197b1c..a880b853ffd 100644
--- a/sci-biology/kallisto/Manifest
+++ b/sci-biology/kallisto/Manifest
@@ -1,2 +1 @@
-DIST kallisto-0.43.1.tar.gz 1067076 BLAKE2B 15a2fc65f0c9db431d9be6b2c8434b582ff7bf95fb659a9838d287feb3486744bca6201563d0f318be47c0f8532b805148a2eabfda633075d6b55bad1c3a406a SHA512 c7725a2d649cf96fcd24a20d542b409777cfd9fe97c09f0f459a5ec2981e0a4f5f0ea03d76d3ec3edf0e498c799fc7d074d442d5e35ddb4043d1f7634619dda8
DIST kallisto-0.46.2.tar.gz 2693869 BLAKE2B 73d725e74133d64b9f7910f69a5fff85eac05b93ad6891807a6fd4e16a1fa16a55306058db3fcb4e0fbfeb0719d3a9d3c8da7d2b76b64dde5a2fea51b0254b99 SHA512 6aca29afa0abe1c6896d27745fd2436c9b9aaf298d70276baf877dbf0aaaba94df54b9a42829c8f8f7c02e7262ecd1837b8a021625c3066a10c0cc0551179093
diff --git a/sci-biology/kallisto/kallisto-0.43.1.ebuild b/sci-biology/kallisto/kallisto-0.43.1.ebuild
deleted file mode 100644
index 0020e891a03..00000000000
--- a/sci-biology/kallisto/kallisto-0.43.1.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit cmake-utils
-
-DESCRIPTION="Near-optimal RNA-Seq quantification"
-HOMEPAGE="http://pachterlab.github.io/kallisto/"
-
-if [[ ${PV} == *9999 ]]; then
- inherit git-r3
- EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
-else
- SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
- KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-fi
-
-LICENSE="BSD"
-SLOT="0"
-
-RDEPEND="
- sci-libs/hdf5:=
- sys-libs/zlib:="
-DEPEND="${RDEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/kallisto/
@ 2021-05-08 14:15 David Seifert
0 siblings, 0 replies; 5+ messages in thread
From: David Seifert @ 2021-05-08 14:15 UTC (permalink / raw
To: gentoo-commits
commit: 56be5d1bb2ed27e39ac7284038fcd6777351a982
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat May 8 14:15:00 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat May 8 14:15:00 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=56be5d1b
sci-biology/kallisto: Remove live ebuild
* Upstream is barely active and doesn't merge PRs
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/kallisto/kallisto-9999.ebuild | 25 -------------------------
1 file changed, 25 deletions(-)
diff --git a/sci-biology/kallisto/kallisto-9999.ebuild b/sci-biology/kallisto/kallisto-9999.ebuild
deleted file mode 100644
index 0020e891a03..00000000000
--- a/sci-biology/kallisto/kallisto-9999.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit cmake-utils
-
-DESCRIPTION="Near-optimal RNA-Seq quantification"
-HOMEPAGE="http://pachterlab.github.io/kallisto/"
-
-if [[ ${PV} == *9999 ]]; then
- inherit git-r3
- EGIT_REPO_URI="https://github.com/pachterlab/kallisto.git"
-else
- SRC_URI="https://github.com/pachterlab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
- KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-fi
-
-LICENSE="BSD"
-SLOT="0"
-
-RDEPEND="
- sci-libs/hdf5:=
- sys-libs/zlib:="
-DEPEND="${RDEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/kallisto/
@ 2024-04-07 6:17 Sam James
0 siblings, 0 replies; 5+ messages in thread
From: Sam James @ 2024-04-07 6:17 UTC (permalink / raw
To: gentoo-commits
commit: aee8ccbdd75ea534b83353705892e8471012f326
Author: Eli Schwartz <eschwartz93 <AT> gmail <DOT> com>
AuthorDate: Fri Apr 5 00:40:33 2024 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sun Apr 7 06:16:10 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aee8ccbd
sci-biology/kallisto: update EAPI 7 -> 8
Signed-off-by: Eli Schwartz <eschwartz93 <AT> gmail.com>
Signed-off-by: Sam James <sam <AT> gentoo.org>
.../kallisto/{kallisto-0.46.2.ebuild => kallisto-0.46.2-r1.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/kallisto/kallisto-0.46.2.ebuild b/sci-biology/kallisto/kallisto-0.46.2-r1.ebuild
similarity index 99%
rename from sci-biology/kallisto/kallisto-0.46.2.ebuild
rename to sci-biology/kallisto/kallisto-0.46.2-r1.ebuild
index a1926bbd10fe..68640687cf9d 100644
--- a/sci-biology/kallisto/kallisto-0.46.2.ebuild
+++ b/sci-biology/kallisto/kallisto-0.46.2-r1.ebuild
@@ -1,7 +1,7 @@
# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=8
inherit cmake flag-o-matic
^ permalink raw reply related [flat|nested] 5+ messages in thread
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