[gentoo-commits] repo/gentoo:master commit in: sci-biology/cutg/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/cutg/

[David Seifert]

commit:     4b7799b55bbd06e9a35e1ff365a1ac4d5d073d0b
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 19 18:41:35 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Feb 19 18:43:23 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4b7799b5

sci-biology/cutg: Drop to unstable

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937

 sci-biology/cutg/cutg-160-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/cutg/cutg-160-r1.ebuild b/sci-biology/cutg/cutg-160-r1.ebuild
index 19863c56d2..e1bb801bc0 100644
--- a/sci-biology/cutg/cutg-160-r1.ebuild
+++ b/sci-biology/cutg/cutg-160-r1.ebuild
@@ -13,7 +13,7 @@ LICENSE="public-domain"
 # Minimal build keeps only the indexed files (if applicable) and the
 # documentation. The non-indexed database is not installed.
 IUSE="emboss minimal"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 
 DEPEND="emboss? ( sci-biology/emboss )"
 RDEPEND="${DEPEND}"

[gentoo-commits] repo/gentoo:master commit in: sci-biology/cutg/

[David Seifert]

commit:     25a60dea75866f20058ff6fa723feb9a043ac5d5
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Apr  5 13:30:39 2021 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Apr  5 13:30:39 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=25a60dea

sci-biology/cutg: Port to EAPI 7

Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/cutg/cutg-160-r1.ebuild | 33 +++++++++++++--------------------
 1 file changed, 13 insertions(+), 20 deletions(-)

diff --git a/sci-biology/cutg/cutg-160-r1.ebuild b/sci-biology/cutg/cutg-160-r1.ebuild
index 9a813096901..97abacaab1e 100644
--- a/sci-biology/cutg/cutg-160-r1.ebuild
+++ b/sci-biology/cutg/cutg-160-r1.ebuild
@@ -1,49 +1,42 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 DESCRIPTION="Codon usage tables calculated from GenBank"
 HOMEPAGE="http://www.kazusa.or.jp/codon/"
 SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
 
-SLOT="0"
 LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 # Minimal build keeps only the indexed files (if applicable) and the
 # documentation. The non-indexed database is not installed.
 IUSE="emboss minimal"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-DEPEND="emboss? ( sci-biology/emboss )"
-RDEPEND="${DEPEND}"
-
 RESTRICT="binchecks strip"
 
+RDEPEND="emboss? ( sci-biology/emboss )"
+BDEPEND="${RDEPEND}"
+
 src_compile() {
 	if use emboss; then
 		mkdir CODONS || die
 		ebegin "Indexing CUTG for usage with EMBOSS."
-		EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
-			"Indexing CUTG failed."
+		EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die "Indexing CUTG failed"
 		eend
 	fi
 }
 
 src_install() {
-	local file
 	dodoc README CODON_LABEL SPSUM_LABEL
+
 	if ! use minimal; then
-		dodir /usr/share/${PN}
-		mv *.codon *.spsum "${ED}"/usr/share/${PN} || die \
-			"Installing raw CUTG database failed."
+		insinto /usr/share/cutg
+		doins *.codon *.spsum
 	fi
 
 	if use emboss; then
-		dodir /usr/share/EMBOSS/data/CODONS
-		cd CODONS || die
-		for file in *; do
-			mv ${file} "${ED}"/usr/share/EMBOSS/data/CODONS/ || die \
-				"Installing the EMBOSS-indexed database failed."
-		done
+		insinto /usr/share/EMBOSS/data
+		doins -r CODONS
 	fi
 }

[gentoo-commits] repo/gentoo:master commit in: sci-biology/cutg/

[Sam James]

commit:     221f6b599dcf26ab84be8e4ee2d77cfbb16c257b
Author:     Thomas Bracht Laumann Jespersen <t <AT> laumann <DOT> xyz>
AuthorDate: Wed Apr 20 19:57:06 2022 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Fri May 13 20:03:34 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=221f6b59

sci-biology/cutg: [QA] eend without argument

Signed-off-by: Thomas Bracht Laumann Jespersen <t <AT> laumann.xyz>
Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-biology/cutg/cutg-160-r1.ebuild | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-biology/cutg/cutg-160-r1.ebuild b/sci-biology/cutg/cutg-160-r1.ebuild
index 97abacaab1e4..417248e5890c 100644
--- a/sci-biology/cutg/cutg-160-r1.ebuild
+++ b/sci-biology/cutg/cutg-160-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -22,8 +22,8 @@ src_compile() {
 	if use emboss; then
 		mkdir CODONS || die
 		ebegin "Indexing CUTG for usage with EMBOSS."
-		EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die "Indexing CUTG failed"
-		eend
+		EMBOSS_DATA="." cutgextract -auto -directory "${S}"
+		eend $? "Indexing CUTG failed" || die
 	fi
 }