* [gentoo-commits] proj/sci:master commit in: sci-biology/vague-bin/
@ 2015-02-10 14:37 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-02-10 14:37 UTC (permalink / raw
To: gentoo-commits
commit: 44a2983ea076940bf40ba0a595a37323e984e28f
Author: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Mon Feb 9 09:09:07 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Feb 9 09:09:07 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=44a2983e
sci-biology/vague-bin-1.0.5: Switch from git-2 to git-r3; Cleanup; Fix KEYWORDS
---
sci-biology/vague-bin/ChangeLog | 3 +++
sci-biology/vague-bin/vague-bin-1.0.5.ebuild | 6 ++----
2 files changed, 5 insertions(+), 4 deletions(-)
diff --git a/sci-biology/vague-bin/ChangeLog b/sci-biology/vague-bin/ChangeLog
index 30734b2..fbb1f77 100644
--- a/sci-biology/vague-bin/ChangeLog
+++ b/sci-biology/vague-bin/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 09 Feb 2015; Marius Brehler <marbre@linux.sungazer.de> epga-9999.ebuild:
+ Switch from git-2 to git-r3; Cleanup; Fix KEYWORDS
+
*vague-bin-1.0.5 (08 Jan 2015)
08 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +files/vague.patch,
diff --git a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
index 479d88a..11ef16b 100644
--- a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
+++ b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
@@ -6,7 +6,7 @@ EAPI=5
inherit java-pkg-2
-[ "$PV" == "9999" ] && inherit git-2
+[ "$PV" == "9999" ] && inherit git-r3
DESCRIPTION="GUI for Velvet de novo assembler"
HOMEPAGE="http://www.vicbioinformatics.com/software.vague.shtml"
@@ -15,14 +15,12 @@ if [ "$PV" == "9999" ]; then
EGIT_REPO_URI="https://github.com/Victorian-Bioinformatics-Consortium/vague"
KEYWORDS=""
else
- SRC_URI="http://www.vicbioinformatics.com/vague-"${PV}".tar.gz"
+ SRC_URI="http://www.vicbioinformatics.com/vague-${PV}.tar.gz"
KEYWORDS="~amd64"
fi
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
DEPEND=">=virtual/jre-1.5
sci-biology/velvet
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/vague-bin/
@ 2015-02-18 16:41 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-02-18 16:41 UTC (permalink / raw
To: gentoo-commits
commit: a099a5a6fdaa381c25d71d293aab2951791e8cbb
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Feb 18 13:48:15 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Feb 18 13:48:15 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a099a5a6
sci-biology/vague-bin: fix SLOT operators
Package-Manager: portage-2.2.17
---
sci-biology/vague-bin/ChangeLog | 3 +++
sci-biology/vague-bin/vague-bin-1.0.5.ebuild | 9 +++++----
2 files changed, 8 insertions(+), 4 deletions(-)
diff --git a/sci-biology/vague-bin/ChangeLog b/sci-biology/vague-bin/ChangeLog
index fbb1f77..1982d25 100644
--- a/sci-biology/vague-bin/ChangeLog
+++ b/sci-biology/vague-bin/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 18 Feb 2015; Justin Lecher <jlec@gentoo.org> vague-bin-1.0.5.ebuild:
+ sci-biology/vague-bin: fix SLOT operators
+
09 Feb 2015; Marius Brehler <marbre@linux.sungazer.de> epga-9999.ebuild:
Switch from git-2 to git-r3; Cleanup; Fix KEYWORDS
diff --git a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
index 11ef16b..b1d8d14 100644
--- a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
+++ b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
@@ -22,12 +22,13 @@ fi
LICENSE="GPL-2"
SLOT="0"
-DEPEND=">=virtual/jre-1.5
+RDEPEND="
+ >=virtual/jre-1.5:*
sci-biology/velvet
sci-biology/velvetk"
-RDEPEND="${DEPEND}"
+DEPEND=">=virtual/jdk-1.5:*"
-S="${WORKDIR}"/vague-"${PV}"
+S="${WORKDIR}"/vague-${PV}
src_prepare(){
epatch "${FILESDIR}"/vague.patch
@@ -35,5 +36,5 @@ src_prepare(){
src_install(){
dobin vague
- java-pkg_dojar vague.jar || die
+ java-pkg_dojar vague.jar
}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/vague-bin/
@ 2018-01-19 15:55 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2018-01-19 15:55 UTC (permalink / raw
To: gentoo-commits
commit: 6a5c3a9302f84e7c243da951dce272c1019cb742
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan 19 15:55:30 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan 19 15:55:30 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6a5c3a93
sci-biology/vague-bin: respect EPREFIX
Package-Manager: Portage-2.3.19, Repoman-2.3.6
sci-biology/vague-bin/vague-bin-1.0.5.ebuild | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
index 6c72d6ee4..bbb594948 100644
--- a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
+++ b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -31,6 +31,7 @@ S="${WORKDIR}"/vague-${PV}
src_prepare(){
epatch "${FILESDIR}"/vague.patch
+ sed -e "s#-jar /usr/share#-jar ${EPREFIX}/usr/share#" -i vague || die
}
src_install(){
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/vague-bin/
@ 2019-04-30 18:40 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2019-04-30 18:40 UTC (permalink / raw
To: gentoo-commits
commit: 72457ca425a702a0640f6bddeef66d3985d03ea5
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Apr 30 18:40:23 2019 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Apr 30 18:40:23 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=72457ca4
sci-biology/vague-bin: drop DEPEND on velvetk
It is gone from the tree.
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
sci-biology/vague-bin/vague-bin-1.0.5.ebuild | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
index bbb594948..dc327b8d6 100644
--- a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
+++ b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -23,8 +23,7 @@ SLOT="0"
RDEPEND="
>=virtual/jre-1.5:*
- sci-biology/velvet
- sci-biology/velvetk"
+ sci-biology/velvet"
DEPEND=">=virtual/jdk-1.5:*"
S="${WORKDIR}"/vague-${PV}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/vague-bin/
@ 2021-01-18 12:57 Andrew Ammerlaan
0 siblings, 0 replies; 6+ messages in thread
From: Andrew Ammerlaan @ 2021-01-18 12:57 UTC (permalink / raw
To: gentoo-commits
commit: 3ad08b5d01c8f7fbf6455808fa35a9976992da8e
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Jan 18 12:57:18 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Jan 18 12:57:18 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3ad08b5d
sci-biology/vague-bin: fix fetching, EAPI bump
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/vague-bin/vague-bin-1.0.5.ebuild | 17 ++++++++++-------
1 file changed, 10 insertions(+), 7 deletions(-)
diff --git a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
index dc327b8d6..50ea6ca72 100644
--- a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
+++ b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
@@ -1,20 +1,19 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
inherit java-pkg-2
-[ "$PV" == "9999" ] && inherit git-r3
-
DESCRIPTION="GUI for Velvet de novo assembler"
-HOMEPAGE="http://www.vicbioinformatics.com/software.vague.shtml"
+HOMEPAGE="https://vicbioinformatics.com/software.vague.shtml"
if [ "$PV" == "9999" ]; then
+ inherit git-r3
EGIT_REPO_URI="https://github.com/Victorian-Bioinformatics-Consortium/vague"
KEYWORDS=""
else
- SRC_URI="http://www.vicbioinformatics.com/vague-${PV}.tar.gz"
+ SRC_URI="https://vicbioinformatics.com/vague-${PV}.tar.gz"
KEYWORDS="~amd64"
fi
@@ -28,8 +27,12 @@ DEPEND=">=virtual/jdk-1.5:*"
S="${WORKDIR}"/vague-${PV}
+PATCHES=(
+ "${FILESDIR}"/vague.patch
+)
+
src_prepare(){
- epatch "${FILESDIR}"/vague.patch
+ default
sed -e "s#-jar /usr/share#-jar ${EPREFIX}/usr/share#" -i vague || die
}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/vague-bin/
@ 2021-03-20 11:03 Andrew Ammerlaan
0 siblings, 0 replies; 6+ messages in thread
From: Andrew Ammerlaan @ 2021-03-20 11:03 UTC (permalink / raw
To: gentoo-commits
commit: 560b7f632fd3e83014db80dd310bd6617d24088b
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar 20 11:01:30 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar 20 11:01:30 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=560b7f63
sci-biology/vague-bin: fix MultipleKeywordsLines
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/vague-bin/vague-bin-1.0.5.ebuild | 1 -
1 file changed, 1 deletion(-)
diff --git a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
index 50ea6ca72..79ed9fc48 100644
--- a/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
+++ b/sci-biology/vague-bin/vague-bin-1.0.5.ebuild
@@ -11,7 +11,6 @@ HOMEPAGE="https://vicbioinformatics.com/software.vague.shtml"
if [ "$PV" == "9999" ]; then
inherit git-r3
EGIT_REPO_URI="https://github.com/Victorian-Bioinformatics-Consortium/vague"
- KEYWORDS=""
else
SRC_URI="https://vicbioinformatics.com/vague-${PV}.tar.gz"
KEYWORDS="~amd64"
^ permalink raw reply related [flat|nested] 6+ messages in thread
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