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* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2021-03-18 12:32 Andrew Ammerlaan
  0 siblings, 0 replies; 18+ messages in thread
From: Andrew Ammerlaan @ 2021-03-18 12:32 UTC (permalink / raw
  To: gentoo-commits

commit:     e898ef7da638b5cc6106933428310626419640a3
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 18 12:10:55 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 18 12:10:55 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e898ef7d

Revert "sci-biology/ugene: remove from tree."

This reverts commit 1b3fdb740a49af440e5f0956f9c64b00be9b7ace.
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/ugene/metadata.xml        | 12 ++++++++++
 sci-biology/ugene/ugene-1.20.0.ebuild | 42 +++++++++++++++++++++++++++++++++++
 2 files changed, 54 insertions(+)

diff --git a/sci-biology/ugene/metadata.xml b/sci-biology/ugene/metadata.xml
new file mode 100644
index 000000000..a3daeebd2
--- /dev/null
+++ b/sci-biology/ugene/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>alexxy@gentoo.org</email>
+		<name>Alexey Shvetsov</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci@gentoo.org</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+</pkgmetadata>

diff --git a/sci-biology/ugene/ugene-1.20.0.ebuild b/sci-biology/ugene/ugene-1.20.0.ebuild
new file mode 100644
index 000000000..3aa9dfebe
--- /dev/null
+++ b/sci-biology/ugene/ugene-1.20.0.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit qmake-utils
+
+DESCRIPTION="A free open-source cross-platform bioinformatics software"
+HOMEPAGE="http://ugene.unipro.ru"
+SRC_URI="http://${PN}.unipro.ru/downloads/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="cpu_flags_x86_sse2"
+
+# http://ugene.net/download.html states Qt5.4 and QtWebkit but:
+#   Project MESSAGE: Cannot build Unipro UGENE with Qt version 4.8.7
+#   Project ERROR: Use at least Qt 5.2.1.
+DEPEND="
+	>=dev-qt/qtgui-5.2.1
+	>=dev-qt/qtscript-5.2.1[scripttools]"
+RDEPEND="${DEPEND}"
+
+LANGS="cs en ru zh"
+
+src_configure() {
+	local CONFIG_OPTS
+	if use amd64; then
+		CONFIG_OPTS+=( CONFIG+="x64" )
+	elif use ppc; then
+		CONFIG_OPTS+=( CONFIG+="ppc" )
+	fi
+
+	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
+
+	eqmake5 $CONFIG_OPTS || die
+}
+
+src_install() {
+	emake DESTDIR="${D}" INSTALL_ROOT="${ED}" install
+}


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2021-11-30 14:01 Martin Mokrejs
  0 siblings, 0 replies; 18+ messages in thread
From: Martin Mokrejs @ 2021-11-30 14:01 UTC (permalink / raw
  To: gentoo-commits

commit:     98ba084c90a88f4365be1740746df0585fb50823
Author:     Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Tue Nov 30 14:00:53 2021 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Nov 30 14:00:53 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=98ba084c

sci-biology/ugene: version bump

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>

 sci-biology/ugene/{ugene-37.0-r1.ebuild => ugene-40.1.ebuild} | 0
 1 file changed, 0 insertions(+), 0 deletions(-)

diff --git a/sci-biology/ugene/ugene-37.0-r1.ebuild b/sci-biology/ugene/ugene-40.1.ebuild
similarity index 100%
rename from sci-biology/ugene/ugene-37.0-r1.ebuild
rename to sci-biology/ugene/ugene-40.1.ebuild


^ permalink raw reply	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2021-03-20 16:59 Andrew Ammerlaan
  0 siblings, 0 replies; 18+ messages in thread
From: Andrew Ammerlaan @ 2021-03-20 16:59 UTC (permalink / raw
  To: gentoo-commits

commit:     47d4c85e08c818fd119d259506160f1050a74257
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar 20 16:58:51 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar 20 16:58:51 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=47d4c85e

sci-biology/ugene: add back CONFIG_OPTS from old ebuild

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/ugene/ugene-37.0-r1.ebuild | 15 +++++++++++++--
 1 file changed, 13 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ugene/ugene-37.0-r1.ebuild b/sci-biology/ugene/ugene-37.0-r1.ebuild
index a7a40d4dc..ab96355c4 100644
--- a/sci-biology/ugene/ugene-37.0-r1.ebuild
+++ b/sci-biology/ugene/ugene-37.0-r1.ebuild
@@ -13,6 +13,8 @@ LICENSE="GPL-2"
 SLOT="0"
 KEYWORDS="~amd64"
 
+IUSE="cpu_flags_x86_sse2"
+
 DEPEND="
 	>=dev-qt/qtgui-5.4.2
 	>=dev-qt/qtsvg-5.4.2
@@ -28,10 +30,19 @@ src_prepare() {
 }
 
 src_configure() {
-	eqmake5
+	local CONFIG_OPTS
+	if use amd64; then
+		CONFIG_OPTS+=( CONFIG+="x64" )
+	elif use ppc; then
+		CONFIG_OPTS+=( CONFIG+="ppc" )
+	fi
+
+	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
+
+	eqmake5 $CONFIG_OPTS || die
 }
 
 src_install() {
 	einstalldocs
-	emake INSTALL_ROOT="${ED}" install
+	emake DESTDIR="${D}" INSTALL_ROOT="${ED}" install
 }


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2021-03-20 16:52 Andrew Ammerlaan
  0 siblings, 0 replies; 18+ messages in thread
From: Andrew Ammerlaan @ 2021-03-20 16:52 UTC (permalink / raw
  To: gentoo-commits

commit:     d2c2ce3d5cfc77e7fb2dcd3ad1724c0ab67e3ab8
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar 20 16:52:05 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar 20 16:52:05 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d2c2ce3d

sci-biology/ugene: inherit xdg

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/ugene/ugene-37.0-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/ugene/ugene-37.0-r1.ebuild b/sci-biology/ugene/ugene-37.0-r1.ebuild
index 967ed716e..a7a40d4dc 100644
--- a/sci-biology/ugene/ugene-37.0-r1.ebuild
+++ b/sci-biology/ugene/ugene-37.0-r1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-inherit qmake-utils
+inherit qmake-utils xdg
 
 DESCRIPTION="A free open-source cross-platform bioinformatics software"
 HOMEPAGE="http://ugene.unipro.ru"


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2021-03-18 19:53 Andrew Ammerlaan
  0 siblings, 0 replies; 18+ messages in thread
From: Andrew Ammerlaan @ 2021-03-18 19:53 UTC (permalink / raw
  To: gentoo-commits

commit:     67f8c1f4d5b5e40fd3c78925085f3fd5c6f2d5bd
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 18 19:50:46 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 18 19:50:46 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=67f8c1f4

sci-biology/ugene: fix filename

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/ugene/ugene-37.0-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/ugene/ugene-37.0-r1.ebuild b/sci-biology/ugene/ugene-37.0-r1.ebuild
index 45ce2f4b3..967ed716e 100644
--- a/sci-biology/ugene/ugene-37.0-r1.ebuild
+++ b/sci-biology/ugene/ugene-37.0-r1.ebuild
@@ -7,7 +7,7 @@ inherit qmake-utils
 
 DESCRIPTION="A free open-source cross-platform bioinformatics software"
 HOMEPAGE="http://ugene.unipro.ru"
-SRC_URI="https://github.com/ugeneunipro/ugene/archive/${PV}.tar.gz"
+SRC_URI="https://github.com/ugeneunipro/ugene/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="GPL-2"
 SLOT="0"


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2021-03-18 15:58 Andrew Ammerlaan
  0 siblings, 0 replies; 18+ messages in thread
From: Andrew Ammerlaan @ 2021-03-18 15:58 UTC (permalink / raw
  To: gentoo-commits

commit:     5bcac17fd32533404f6d89b513e7669c19888b82
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 18 15:58:39 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 18 15:58:39 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5bcac17f

sci-biology/ugene: fix my stupid mistake

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/ugene/{ugene-37.0.ebuild => ugene-37.0-r1.ebuild} | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/ugene/ugene-37.0.ebuild b/sci-biology/ugene/ugene-37.0-r1.ebuild
similarity index 94%
rename from sci-biology/ugene/ugene-37.0.ebuild
rename to sci-biology/ugene/ugene-37.0-r1.ebuild
index c1ffff634..45ce2f4b3 100644
--- a/sci-biology/ugene/ugene-37.0.ebuild
+++ b/sci-biology/ugene/ugene-37.0-r1.ebuild
@@ -33,5 +33,5 @@ src_configure() {
 
 src_install() {
 	einstalldocs
-	emake INSTALL_ROOT="${ED}"
+	emake INSTALL_ROOT="${ED}" install
 }


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2021-03-18 14:31 Andrew Ammerlaan
  0 siblings, 0 replies; 18+ messages in thread
From: Andrew Ammerlaan @ 2021-03-18 14:31 UTC (permalink / raw
  To: gentoo-commits

commit:     365484e3d565d0312d3fe87d6f3d8073bde50575
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 18 14:31:27 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 18 14:31:27 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=365484e3

sci-biology/ugene: cmake --> qmake

cmake does not have install target
the qmake build system does

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/ugene/ugene-37.0.ebuild | 13 +++++++++++--
 1 file changed, 11 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ugene/ugene-37.0.ebuild b/sci-biology/ugene/ugene-37.0.ebuild
index f0b3527a3..c1ffff634 100644
--- a/sci-biology/ugene/ugene-37.0.ebuild
+++ b/sci-biology/ugene/ugene-37.0.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-inherit cmake
+inherit qmake-utils
 
 DESCRIPTION="A free open-source cross-platform bioinformatics software"
 HOMEPAGE="http://ugene.unipro.ru"
@@ -21,8 +21,17 @@ DEPEND="
 RDEPEND="${DEPEND}"
 
 src_prepare() {
-	cmake_src_prepare
+	default
 	# remove Werror
 	sed -i -e '/-Werror=/d' CMakeLists.txt || die
 	sed -i -e '/-Werror=/d' src/ugene_globals.pri || die
 }
+
+src_configure() {
+	eqmake5
+}
+
+src_install() {
+	einstalldocs
+	emake INSTALL_ROOT="${ED}"
+}


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2021-03-18 12:50 Andrew Ammerlaan
  0 siblings, 0 replies; 18+ messages in thread
From: Andrew Ammerlaan @ 2021-03-18 12:50 UTC (permalink / raw
  To: gentoo-commits

commit:     0caa148ee0ebb4e150a8013a0c6c28f83b146d5f
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 18 12:50:29 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 18 12:50:29 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=0caa148e

sci-biology/ugene: remove Werror flags

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/ugene/ugene-37.0.ebuild | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/sci-biology/ugene/ugene-37.0.ebuild b/sci-biology/ugene/ugene-37.0.ebuild
index 0a10cdfcc..f0b3527a3 100644
--- a/sci-biology/ugene/ugene-37.0.ebuild
+++ b/sci-biology/ugene/ugene-37.0.ebuild
@@ -19,3 +19,10 @@ DEPEND="
 	>=dev-qt/qtscript-5.4.2[scripttools]
 "
 RDEPEND="${DEPEND}"
+
+src_prepare() {
+	cmake_src_prepare
+	# remove Werror
+	sed -i -e '/-Werror=/d' CMakeLists.txt || die
+	sed -i -e '/-Werror=/d' src/ugene_globals.pri || die
+}


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2021-03-18 12:32 Andrew Ammerlaan
  0 siblings, 0 replies; 18+ messages in thread
From: Andrew Ammerlaan @ 2021-03-18 12:32 UTC (permalink / raw
  To: gentoo-commits

commit:     ae07cd127720d6469a7ef97fa6881184af5ce2dc
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 18 12:31:59 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 18 12:31:59 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae07cd12

sci-biology/ugene: bring back version 37.0

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/ugene/ugene-1.20.0.ebuild | 42 -----------------------------------
 sci-biology/ugene/ugene-37.0.ebuild   | 21 ++++++++++++++++++
 2 files changed, 21 insertions(+), 42 deletions(-)

diff --git a/sci-biology/ugene/ugene-1.20.0.ebuild b/sci-biology/ugene/ugene-1.20.0.ebuild
deleted file mode 100644
index 3aa9dfebe..000000000
--- a/sci-biology/ugene/ugene-1.20.0.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit qmake-utils
-
-DESCRIPTION="A free open-source cross-platform bioinformatics software"
-HOMEPAGE="http://ugene.unipro.ru"
-SRC_URI="http://${PN}.unipro.ru/downloads/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="cpu_flags_x86_sse2"
-
-# http://ugene.net/download.html states Qt5.4 and QtWebkit but:
-#   Project MESSAGE: Cannot build Unipro UGENE with Qt version 4.8.7
-#   Project ERROR: Use at least Qt 5.2.1.
-DEPEND="
-	>=dev-qt/qtgui-5.2.1
-	>=dev-qt/qtscript-5.2.1[scripttools]"
-RDEPEND="${DEPEND}"
-
-LANGS="cs en ru zh"
-
-src_configure() {
-	local CONFIG_OPTS
-	if use amd64; then
-		CONFIG_OPTS+=( CONFIG+="x64" )
-	elif use ppc; then
-		CONFIG_OPTS+=( CONFIG+="ppc" )
-	fi
-
-	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
-
-	eqmake5 $CONFIG_OPTS || die
-}
-
-src_install() {
-	emake DESTDIR="${D}" INSTALL_ROOT="${ED}" install
-}

diff --git a/sci-biology/ugene/ugene-37.0.ebuild b/sci-biology/ugene/ugene-37.0.ebuild
new file mode 100644
index 000000000..0a10cdfcc
--- /dev/null
+++ b/sci-biology/ugene/ugene-37.0.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit cmake
+
+DESCRIPTION="A free open-source cross-platform bioinformatics software"
+HOMEPAGE="http://ugene.unipro.ru"
+SRC_URI="https://github.com/ugeneunipro/ugene/archive/${PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+
+DEPEND="
+	>=dev-qt/qtgui-5.4.2
+	>=dev-qt/qtsvg-5.4.2
+	>=dev-qt/qtscript-5.4.2[scripttools]
+"
+RDEPEND="${DEPEND}"


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2020-02-03  4:02 Benda XU
  0 siblings, 0 replies; 18+ messages in thread
From: Benda XU @ 2020-02-03  4:02 UTC (permalink / raw
  To: gentoo-commits

commit:     1b3fdb740a49af440e5f0956f9c64b00be9b7ace
Author:     Benda Xu <heroxbd <AT> gentoo <DOT> org>
AuthorDate: Mon Feb  3 03:39:43 2020 +0000
Commit:     Benda XU <heroxbd <AT> gentoo <DOT> org>
CommitDate: Mon Feb  3 04:02:35 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1b3fdb74

sci-biology/ugene: remove from tree.

  SRC_URI is dead. Upstream is alive, but it is not trivial to figure
  out the source tarball download of the new version.

  Feel free to add this package back to tree.

Bug: https://bugs.gentoo.org/707558
Signed-off-by: Benda Xu <heroxbd <AT> gentoo.org>

 sci-biology/ugene/metadata.xml        | 12 ----------
 sci-biology/ugene/ugene-1.20.0.ebuild | 42 -----------------------------------
 2 files changed, 54 deletions(-)

diff --git a/sci-biology/ugene/metadata.xml b/sci-biology/ugene/metadata.xml
deleted file mode 100644
index a3daeebd2..000000000
--- a/sci-biology/ugene/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>alexxy@gentoo.org</email>
-		<name>Alexey Shvetsov</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci@gentoo.org</email>
-		<name>Gentoo Science Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-biology/ugene/ugene-1.20.0.ebuild b/sci-biology/ugene/ugene-1.20.0.ebuild
deleted file mode 100644
index 3aa9dfebe..000000000
--- a/sci-biology/ugene/ugene-1.20.0.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit qmake-utils
-
-DESCRIPTION="A free open-source cross-platform bioinformatics software"
-HOMEPAGE="http://ugene.unipro.ru"
-SRC_URI="http://${PN}.unipro.ru/downloads/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="cpu_flags_x86_sse2"
-
-# http://ugene.net/download.html states Qt5.4 and QtWebkit but:
-#   Project MESSAGE: Cannot build Unipro UGENE with Qt version 4.8.7
-#   Project ERROR: Use at least Qt 5.2.1.
-DEPEND="
-	>=dev-qt/qtgui-5.2.1
-	>=dev-qt/qtscript-5.2.1[scripttools]"
-RDEPEND="${DEPEND}"
-
-LANGS="cs en ru zh"
-
-src_configure() {
-	local CONFIG_OPTS
-	if use amd64; then
-		CONFIG_OPTS+=( CONFIG+="x64" )
-	elif use ppc; then
-		CONFIG_OPTS+=( CONFIG+="ppc" )
-	fi
-
-	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
-
-	eqmake5 $CONFIG_OPTS || die
-}
-
-src_install() {
-	emake DESTDIR="${D}" INSTALL_ROOT="${ED}" install
-}


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2018-09-10  1:36 Benda XU
  0 siblings, 0 replies; 18+ messages in thread
From: Benda XU @ 2018-09-10  1:36 UTC (permalink / raw
  To: gentoo-commits

commit:     955116fde829ade97ea11c5a48db3433f4f5e3bb
Author:     Benda Xu <heroxbd <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 10 01:30:49 2018 +0000
Commit:     Benda XU <heroxbd <AT> gentoo <DOT> org>
CommitDate: Mon Sep 10 01:34:53 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=955116fd

sci-biology/ugene: drop old versions.

Bug: https://bugs.gentoo.org/663110
Package-Manager: Portage-2.3.48, Repoman-2.3.10

 sci-biology/ugene/ugene-1.13.3.ebuild | 34 ----------------------------------
 sci-biology/ugene/ugene-1.16.1.ebuild | 34 ----------------------------------
 2 files changed, 68 deletions(-)

diff --git a/sci-biology/ugene/ugene-1.13.3.ebuild b/sci-biology/ugene/ugene-1.13.3.ebuild
deleted file mode 100644
index 7649ead56..000000000
--- a/sci-biology/ugene/ugene-1.13.3.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit qt4-r2
-
-DESCRIPTION="A free open-source cross-platform bioinformatics software"
-HOMEPAGE="http://ugene.unipro.ru"
-SRC_URI="http://${PN}.unipro.ru/downloads/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="cpu_flags_x86_sse2"
-
-DEPEND="
-	dev-qt/qtgui:4"
-RDEPEND="${DEPEND}"
-
-LANGS="cs en ru zh"
-
-src_configure() {
-	local CONFIG_OPTS
-	if use amd64; then
-		CONFIG_OPTS+=( CONFIG+="x64" )
-	elif use ppc; then
-		CONFIG_OPTS+=( CONFIG+="ppc" )
-	fi
-
-	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
-
-	eqmake4 $CONFIG_OPTS || die
-}

diff --git a/sci-biology/ugene/ugene-1.16.1.ebuild b/sci-biology/ugene/ugene-1.16.1.ebuild
deleted file mode 100644
index 7649ead56..000000000
--- a/sci-biology/ugene/ugene-1.16.1.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit qt4-r2
-
-DESCRIPTION="A free open-source cross-platform bioinformatics software"
-HOMEPAGE="http://ugene.unipro.ru"
-SRC_URI="http://${PN}.unipro.ru/downloads/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="cpu_flags_x86_sse2"
-
-DEPEND="
-	dev-qt/qtgui:4"
-RDEPEND="${DEPEND}"
-
-LANGS="cs en ru zh"
-
-src_configure() {
-	local CONFIG_OPTS
-	if use amd64; then
-		CONFIG_OPTS+=( CONFIG+="x64" )
-	elif use ppc; then
-		CONFIG_OPTS+=( CONFIG+="ppc" )
-	fi
-
-	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
-
-	eqmake4 $CONFIG_OPTS || die
-}


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2016-01-25 19:47 Justin Lecher
  0 siblings, 0 replies; 18+ messages in thread
From: Justin Lecher @ 2016-01-25 19:47 UTC (permalink / raw
  To: gentoo-commits

commit:     3efd1a49d9fc70a792e91a369e005484af7ccd24
Author:     Soren Harward <stharward <AT> gmail <DOT> com>
AuthorDate: Mon Jan 25 19:33:10 2016 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 25 19:33:10 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=3efd1a49

ugene-1.20.0 needs qtscript[scripttools]

workflow_designer plugin needs QtScriptTools, so make this flag
mandatory.  Tested with qtscript-5.5.1.

 sci-biology/ugene/ugene-1.20.0.ebuild | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/sci-biology/ugene/ugene-1.20.0.ebuild b/sci-biology/ugene/ugene-1.20.0.ebuild
index f1d6648..99719c8 100644
--- a/sci-biology/ugene/ugene-1.20.0.ebuild
+++ b/sci-biology/ugene/ugene-1.20.0.ebuild
@@ -19,7 +19,8 @@ IUSE="cpu_flags_x86_sse2"
 #   Project MESSAGE: Cannot build Unipro UGENE with Qt version 4.8.7
 #   Project ERROR: Use at least Qt 5.2.1. 
 DEPEND="
-	>=dev-qt/qtgui-5.2.1"
+	>=dev-qt/qtgui-5.2.1
+	>=dev-qt/qtscript-5.2.1[scripttools]"
 RDEPEND="${DEPEND}"
 
 LANGS="cs en ru zh"


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2016-01-05 16:49 Alexey Shvetsov
  0 siblings, 0 replies; 18+ messages in thread
From: Alexey Shvetsov @ 2016-01-05 16:49 UTC (permalink / raw
  To: gentoo-commits

commit:     2c053fa093d79ef628eaf5d6fc885a9f1c20c0cf
Author:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Tue Jan  5 16:49:26 2016 +0000
Commit:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Tue Jan  5 16:49:26 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=2c053fa0

sci-biology/ugene: Fix install target

Package-Manager: portage-2.2.26

 sci-biology/ugene/ChangeLog           | 3 +++
 sci-biology/ugene/ugene-1.20.0.ebuild | 4 ++++
 2 files changed, 7 insertions(+)

diff --git a/sci-biology/ugene/ChangeLog b/sci-biology/ugene/ChangeLog
index cdde133..f5bc37c 100644
--- a/sci-biology/ugene/ChangeLog
+++ b/sci-biology/ugene/ChangeLog
@@ -3,6 +3,9 @@
 # $Id$
 
   05 Jan 2016; Alexey Shvetsov <alexxy@gentoo.org> ugene-1.20.0.ebuild:
+  sci-biology/ugene: Fix install target
+
+  05 Jan 2016; Alexey Shvetsov <alexxy@gentoo.org> ugene-1.20.0.ebuild:
   sci-biology/ugene: Make it actualy compile
 
 *ugene-1.20.0 (04 Jan 2016)

diff --git a/sci-biology/ugene/ugene-1.20.0.ebuild b/sci-biology/ugene/ugene-1.20.0.ebuild
index 75beb82..f1d6648 100644
--- a/sci-biology/ugene/ugene-1.20.0.ebuild
+++ b/sci-biology/ugene/ugene-1.20.0.ebuild
@@ -36,3 +36,7 @@ src_configure() {
 
 	eqmake5 $CONFIG_OPTS || die
 }
+
+src_install() {
+	emake DESTDIR="${D}" INSTALL_ROOT="${ED}" install
+}


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2016-01-05 14:47 Alexey Shvetsov
  0 siblings, 0 replies; 18+ messages in thread
From: Alexey Shvetsov @ 2016-01-05 14:47 UTC (permalink / raw
  To: gentoo-commits

commit:     02584effffa3b8da25fc366b27611c87699af537
Author:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Tue Jan  5 14:47:40 2016 +0000
Commit:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Tue Jan  5 14:47:40 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=02584eff

sci-biology/ugene: Make it actualy compile

Package-Manager: portage-2.2.26

 sci-biology/ugene/ChangeLog           | 3 +++
 sci-biology/ugene/ugene-1.20.0.ebuild | 4 ++--
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ugene/ChangeLog b/sci-biology/ugene/ChangeLog
index 57d457c..cdde133 100644
--- a/sci-biology/ugene/ChangeLog
+++ b/sci-biology/ugene/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2016 Gentoo Foundation; Distributed under the GPL v2
 # $Id$
 
+  05 Jan 2016; Alexey Shvetsov <alexxy@gentoo.org> ugene-1.20.0.ebuild:
+  sci-biology/ugene: Make it actualy compile
+
 *ugene-1.20.0 (04 Jan 2016)
 
   04 Jan 2016; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

diff --git a/sci-biology/ugene/ugene-1.20.0.ebuild b/sci-biology/ugene/ugene-1.20.0.ebuild
index 206008c..75beb82 100644
--- a/sci-biology/ugene/ugene-1.20.0.ebuild
+++ b/sci-biology/ugene/ugene-1.20.0.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=5
 
-inherit qt4-r2
+inherit qmake-utils
 
 DESCRIPTION="A free open-source cross-platform bioinformatics software"
 HOMEPAGE="http://ugene.unipro.ru"
@@ -34,5 +34,5 @@ src_configure() {
 
 	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
 
-	eqmake4 $CONFIG_OPTS || die
+	eqmake5 $CONFIG_OPTS || die
 }


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2016-01-04 14:43 Martin Mokrejs
  0 siblings, 0 replies; 18+ messages in thread
From: Martin Mokrejs @ 2016-01-04 14:43 UTC (permalink / raw
  To: gentoo-commits

commit:     d64b45637881bf496c6eaaf38a1047ac006958e6
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Jan  4 14:41:40 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Jan  4 14:41:40 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d64b4563

sci-biology/ugene: version bump, maybe the >=Qt5-5.2.1 should be specified more properly?

Package-Manager: portage-2.2.26

 sci-biology/ugene/ChangeLog           |  9 ++++++++-
 sci-biology/ugene/ugene-1.20.0.ebuild | 38 +++++++++++++++++++++++++++++++++++
 2 files changed, 46 insertions(+), 1 deletion(-)

diff --git a/sci-biology/ugene/ChangeLog b/sci-biology/ugene/ChangeLog
index 9899da6..57d457c 100644
--- a/sci-biology/ugene/ChangeLog
+++ b/sci-biology/ugene/ChangeLog
@@ -1,7 +1,14 @@
 # ChangeLog for sci-biology/ugene
-# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2016 Gentoo Foundation; Distributed under the GPL v2
 # $Id$
 
+*ugene-1.20.0 (04 Jan 2016)
+
+  04 Jan 2016; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +ugene-1.20.0.ebuild:
+  sci-biology/ugene: version bump, maybe the >=Qt5-5.2.1 should be specified
+  more properly?
+
 *ugene-1.16.1 (09 May 2015)
 
   09 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

diff --git a/sci-biology/ugene/ugene-1.20.0.ebuild b/sci-biology/ugene/ugene-1.20.0.ebuild
new file mode 100644
index 0000000..206008c
--- /dev/null
+++ b/sci-biology/ugene/ugene-1.20.0.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit qt4-r2
+
+DESCRIPTION="A free open-source cross-platform bioinformatics software"
+HOMEPAGE="http://ugene.unipro.ru"
+SRC_URI="http://${PN}.unipro.ru/downloads/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="cpu_flags_x86_sse2"
+
+# http://ugene.net/download.html states Qt5.4 and QtWebkit but:
+#   Project MESSAGE: Cannot build Unipro UGENE with Qt version 4.8.7
+#   Project ERROR: Use at least Qt 5.2.1. 
+DEPEND="
+	>=dev-qt/qtgui-5.2.1"
+RDEPEND="${DEPEND}"
+
+LANGS="cs en ru zh"
+
+src_configure() {
+	local CONFIG_OPTS
+	if use amd64; then
+		CONFIG_OPTS+=( CONFIG+="x64" )
+	elif use ppc; then
+		CONFIG_OPTS+=( CONFIG+="ppc" )
+	fi
+
+	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
+
+	eqmake4 $CONFIG_OPTS || die
+}


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2015-05-09 21:41 Martin Mokrejs
  0 siblings, 0 replies; 18+ messages in thread
From: Martin Mokrejs @ 2015-05-09 21:41 UTC (permalink / raw
  To: gentoo-commits

commit:     8dcd8558167579657ff0a26126f343af2572d069
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat May  9 21:41:34 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat May  9 21:41:34 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8dcd8558

sci-biology/ugene: version bump

Package-Manager: portage-2.2.18

 sci-biology/ugene/ChangeLog           |  6 ++++++
 sci-biology/ugene/ugene-1.16.1.ebuild | 35 +++++++++++++++++++++++++++++++++++
 2 files changed, 41 insertions(+)

diff --git a/sci-biology/ugene/ChangeLog b/sci-biology/ugene/ChangeLog
index e7a8604..53c008c 100644
--- a/sci-biology/ugene/ChangeLog
+++ b/sci-biology/ugene/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*ugene-1.16.1 (09 May 2015)
+
+  09 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +ugene-1.16.1.ebuild:
+  sci-biology/ugene: version bump
+
   01 Feb 2015; Marius Brehler <marbre@linux.sungazer.de>
   ugene-1.13.3.ebuild.ebuild:
   Convert sse2 to cpu_flags_x86_sse2

diff --git a/sci-biology/ugene/ugene-1.16.1.ebuild b/sci-biology/ugene/ugene-1.16.1.ebuild
new file mode 100644
index 0000000..9d6e4fb
--- /dev/null
+++ b/sci-biology/ugene/ugene-1.16.1.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit qt4-r2
+
+DESCRIPTION="A free open-source cross-platform bioinformatics software"
+HOMEPAGE="http://ugene.unipro.ru"
+SRC_URI="http://${PN}.unipro.ru/downloads/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="cpu_flags_x86_sse2"
+
+DEPEND="
+	dev-qt/qtgui:4"
+RDEPEND="${DEPEND}"
+
+LANGS="cs en ru zh"
+
+src_configure() {
+	local CONFIG_OPTS
+	if use amd64; then
+		CONFIG_OPTS+=( CONFIG+="x64" )
+	elif use ppc; then
+		CONFIG_OPTS+=( CONFIG+="ppc" )
+	fi
+
+	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
+
+	eqmake4 $CONFIG_OPTS || die
+}


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2015-02-02 12:06 Justin Lecher
  0 siblings, 0 replies; 18+ messages in thread
From: Justin Lecher @ 2015-02-02 12:06 UTC (permalink / raw
  To: gentoo-commits

commit:     8930ee5bdd97ef5d99b6cbb99037c7b9a1ea5a39
Author:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Sun Feb  1 18:13:23 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb  1 18:13:23 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8930ee5b

sci-biology/ugene: Convert sse2 to cpu_flags_x86_sse2

---
 sci-biology/ugene/ChangeLog           | 6 +++++-
 sci-biology/ugene/ugene-1.13.3.ebuild | 6 +++---
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/sci-biology/ugene/ChangeLog b/sci-biology/ugene/ChangeLog
index cff7871..e7a8604 100644
--- a/sci-biology/ugene/ChangeLog
+++ b/sci-biology/ugene/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/ugene
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  01 Feb 2015; Marius Brehler <marbre@linux.sungazer.de>
+  ugene-1.13.3.ebuild.ebuild:
+  Convert sse2 to cpu_flags_x86_sse2
+
 *ugene-1.13.3 (01 Jun 2014)
 
   01 Jun 2014; Alexey Shvetsov <alexxy@gentoo.org> +metadata.xml,

diff --git a/sci-biology/ugene/ugene-1.13.3.ebuild b/sci-biology/ugene/ugene-1.13.3.ebuild
index af8c070..9d6e4fb 100644
--- a/sci-biology/ugene/ugene-1.13.3.ebuild
+++ b/sci-biology/ugene/ugene-1.13.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -13,7 +13,7 @@ SRC_URI="http://${PN}.unipro.ru/downloads/${P}.tar.gz"
 LICENSE="GPL-2"
 SLOT="0"
 KEYWORDS="~amd64"
-IUSE="sse2"
+IUSE="cpu_flags_x86_sse2"
 
 DEPEND="
 	dev-qt/qtgui:4"
@@ -29,7 +29,7 @@ src_configure() {
 		CONFIG_OPTS+=( CONFIG+="ppc" )
 	fi
 
-	use sse2 && CONFIG_OPTS+=( use_sse2 )
+	use cpu_flags_x86_sse2 && CONFIG_OPTS+=( use_sse2 )
 
 	eqmake4 $CONFIG_OPTS || die
 }


^ permalink raw reply related	[flat|nested] 18+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ugene/
@ 2014-06-02  3:36 Alexey Shvetsov
  0 siblings, 0 replies; 18+ messages in thread
From: Alexey Shvetsov @ 2014-06-02  3:36 UTC (permalink / raw
  To: gentoo-commits

commit:     439dc67ce3b2feb49ccc6d44ba4993782bdb6066
Author:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Sun Jun  1 19:05:14 2014 +0000
Commit:     Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Mon Jun  2 03:35:59 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=439dc67c

Add new ebuild

Package-Manager: portage-2.2.10

---
 sci-biology/ugene/ChangeLog           |  9 +++++++++
 sci-biology/ugene/metadata.xml        |  9 +++++++++
 sci-biology/ugene/ugene-1.13.3.ebuild | 35 +++++++++++++++++++++++++++++++++++
 3 files changed, 53 insertions(+)

diff --git a/sci-biology/ugene/ChangeLog b/sci-biology/ugene/ChangeLog
new file mode 100644
index 0000000..cff7871
--- /dev/null
+++ b/sci-biology/ugene/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/ugene
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*ugene-1.13.3 (01 Jun 2014)
+
+  01 Jun 2014; Alexey Shvetsov <alexxy@gentoo.org> +metadata.xml,
+  +ugene-1.13.3.ebuild:
+  Add new ebuild

diff --git a/sci-biology/ugene/metadata.xml b/sci-biology/ugene/metadata.xml
new file mode 100644
index 0000000..fe31728
--- /dev/null
+++ b/sci-biology/ugene/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci</herd>
+	<maintainer>
+		<email>alexxy@gentoo.org</email>
+		<name>Alexey Shvetsov</name>
+	</maintainer>
+</pkgmetadata>

diff --git a/sci-biology/ugene/ugene-1.13.3.ebuild b/sci-biology/ugene/ugene-1.13.3.ebuild
new file mode 100644
index 0000000..af8c070
--- /dev/null
+++ b/sci-biology/ugene/ugene-1.13.3.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit qt4-r2
+
+DESCRIPTION="A free open-source cross-platform bioinformatics software"
+HOMEPAGE="http://ugene.unipro.ru"
+SRC_URI="http://${PN}.unipro.ru/downloads/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="sse2"
+
+DEPEND="
+	dev-qt/qtgui:4"
+RDEPEND="${DEPEND}"
+
+LANGS="cs en ru zh"
+
+src_configure() {
+	local CONFIG_OPTS
+	if use amd64; then
+		CONFIG_OPTS+=( CONFIG+="x64" )
+	elif use ppc; then
+		CONFIG_OPTS+=( CONFIG+="ppc" )
+	fi
+
+	use sse2 && CONFIG_OPTS+=( use_sse2 )
+
+	eqmake4 $CONFIG_OPTS || die
+}


^ permalink raw reply related	[flat|nested] 18+ messages in thread
end of thread, other threads:[~2021-11-30 14:01 UTC | newest]

Thread overview: 18+ messages (download: mbox.gz follow: Atom feed
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2020-02-03  4:02 Benda XU
2018-09-10  1:36 Benda XU
2016-01-25 19:47 Justin Lecher
2016-01-05 16:49 Alexey Shvetsov
2016-01-05 14:47 Alexey Shvetsov
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