From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 293A21382C5 for ; Wed, 17 Mar 2021 18:19:29 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 54CB6E0895; Wed, 17 Mar 2021 18:19:28 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 3D46DE0895 for ; Wed, 17 Mar 2021 18:19:27 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A2BAA340E74 for ; Wed, 17 Mar 2021 18:19:26 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 4FB6C4F1 for ; Wed, 17 Mar 2021 18:19:25 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1616005151.601c9013c6e86a87af3ca3b3185c285bccdf90ce.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/minimap2/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/minimap2/metadata.xml sci-biology/minimap2/minimap2-2.17.ebuild X-VCS-Directories: sci-biology/minimap2/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 601c9013c6e86a87af3ca3b3185c285bccdf90ce X-VCS-Branch: master Date: Wed, 17 Mar 2021 18:19:25 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 2f067db7-2dc2-4737-bee7-52e675bc138c X-Archives-Hash: f1165613b64aead4e0bf3bcaad05dd72 commit: 601c9013c6e86a87af3ca3b3185c285bccdf90ce Author: Martin Mokrejs gmail com> AuthorDate: Wed Mar 17 18:19:11 2021 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Wed Mar 17 18:19:11 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=601c9013 sci-biology/minimap2: new package Arguably we could do something about CPUFLAGS but as the package compiles its for for all SSE2 up to SSE4.1 combinations maybe we only should ensure -mtune and -march options were filtered by the ebuild. Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Martin Mokrejs gmail.com> sci-biology/minimap2/metadata.xml | 15 +++++++++++++++ sci-biology/minimap2/minimap2-2.17.ebuild | 20 ++++++++++++++++++++ 2 files changed, 35 insertions(+) diff --git a/sci-biology/minimap2/metadata.xml b/sci-biology/minimap2/metadata.xml new file mode 100644 index 000000000..c9e82c96a --- /dev/null +++ b/sci-biology/minimap2/metadata.xml @@ -0,0 +1,15 @@ + + + + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + + sci-biology@gentoo.org + Gentoo Biology Project + + + minimap2 + + diff --git a/sci-biology/minimap2/minimap2-2.17.ebuild b/sci-biology/minimap2/minimap2-2.17.ebuild new file mode 100644 index 000000000..e40058243 --- /dev/null +++ b/sci-biology/minimap2/minimap2-2.17.ebuild @@ -0,0 +1,20 @@ +# Copyright 2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="splice-aware sequence aligner" +HOMEPAGE="https://github.com/lh3/minimap2" +SRC_URI="https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17.tar.bz2 -> ${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="${DEPEND}" +BDEPEND="" + +src_install(){ + dobin "${PN}" +}