From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 1865E13835B for ; Sat, 6 Mar 2021 16:13:20 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 53A5AE08EF; Sat, 6 Mar 2021 16:13:19 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 3BF6DE08EF for ; Sat, 6 Mar 2021 16:13:19 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 24EC4340E11 for ; Sat, 6 Mar 2021 16:13:18 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id CE7D0585 for ; Sat, 6 Mar 2021 16:13:16 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1615047113.280c1549b69cc4b0a7f68def5671c5a27ac59e34.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/vt/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/vt/vt-9999.ebuild X-VCS-Directories: sci-biology/vt/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 280c1549b69cc4b0a7f68def5671c5a27ac59e34 X-VCS-Branch: master Date: Sat, 6 Mar 2021 16:13:16 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: ff7dd027-460f-446f-940c-30fd686b16ae X-Archives-Hash: fc506f49f1911061b1d750616f735eb6 commit: 280c1549b69cc4b0a7f68def5671c5a27ac59e34 Author: Andrew Ammerlaan riseup net> AuthorDate: Sat Mar 6 16:11:53 2021 +0000 Commit: Andrew Ammerlaan riseup net> CommitDate: Sat Mar 6 16:11:53 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=280c1549 sci-biology/vt: EAPI bump Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/vt/vt-9999.ebuild | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/sci-biology/vt/vt-9999.ebuild b/sci-biology/vt/vt-9999.ebuild index 59b45030c..fbc2d7a5e 100644 --- a/sci-biology/vt/vt-9999.ebuild +++ b/sci-biology/vt/vt-9999.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit git-r3 toolchain-funcs @@ -31,6 +31,7 @@ RDEPEND="${DEPEND} # Compiles statically bundled version of htslib and Rmath, only libpcre2 is dynamically linked src_prepare(){ + default sed -e "s/= -O3/= ${CFLAGS}/" -i Makefile || die sed -e 's/^CXX = /CXX ?= /' -i Makefile || die sed -e "s/-g -Wall -O2/${CFLAGS}/" -i lib/htslib/Makefile || die