From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 2F2B41382C5 for ; Sat, 6 Mar 2021 12:49:38 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 53947E088B; Sat, 6 Mar 2021 12:49:37 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 3DBE9E088B for ; Sat, 6 Mar 2021 12:49:37 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 0760A340ECE for ; Sat, 6 Mar 2021 12:49:36 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 0E2A72A9 for ; Sat, 6 Mar 2021 12:49:34 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1615034006.6929b1a09d3e66fd239b9ea5983306aeaf9ec249.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/mip-scaffolder/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/mip-scaffolder/mip-scaffolder-0.6.ebuild X-VCS-Directories: sci-biology/mip-scaffolder/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 6929b1a09d3e66fd239b9ea5983306aeaf9ec249 X-VCS-Branch: master Date: Sat, 6 Mar 2021 12:49:34 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: ada930c3-abc6-49ee-b7eb-af97a55d2bc8 X-Archives-Hash: 4f4ba996aa375d6dba8cf450a93b8b28 commit: 6929b1a09d3e66fd239b9ea5983306aeaf9ec249 Author: Andrew Ammerlaan riseup net> AuthorDate: Sat Mar 6 12:33:26 2021 +0000 Commit: Andrew Ammerlaan riseup net> CommitDate: Sat Mar 6 12:33:26 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6929b1a0 sci-biology/mip-scaffolder: EAPI bump Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/mip-scaffolder/mip-scaffolder-0.6.ebuild | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/sci-biology/mip-scaffolder/mip-scaffolder-0.6.ebuild b/sci-biology/mip-scaffolder/mip-scaffolder-0.6.ebuild index cb1da348f..aa2c6b3e7 100644 --- a/sci-biology/mip-scaffolder/mip-scaffolder-0.6.ebuild +++ b/sci-biology/mip-scaffolder/mip-scaffolder-0.6.ebuild @@ -1,18 +1,17 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit toolchain-funcs DESCRIPTION="Scaffold contigs using ABI Solid or Illumina mate pair info" HOMEPAGE="http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder" -SRC_URI="http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/"${P}".tar.gz" +SRC_URI="http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/${P}.tar.gz" LICENSE="BSD-2" SLOT="0" KEYWORDS="~amd64" -IUSE="" DEPEND="sci-libs/lemon sci-mathematics/lpsolve @@ -20,6 +19,7 @@ DEPEND="sci-libs/lemon RDEPEND="${DEPEND}" src_prepare(){ + default sed -e 's:/home/user/lp-solve/:/usr/include/lpsolve/:; s:/home/user/lemon/:/usr/include/lemon:; s:/home/user/mip-scaffolder-0.6/:/usr/bin:' -i Makefile find . -name Makefile | while read f; do sed -e "s:CC=g++:CC=$(tc-getCXX):; s:CFLAGS=-Wall -g -O9:CFLAGS=${CXXFLAGS}:" -i $f; done sed -e 's:$(LPSOLVEROOT)/liblpsolve55.a:-llpsolve55:' -i split-scaffold/Makefile