* [gentoo-commits] proj/sci:master commit in: sci-biology/minced/
@ 2015-04-27 11:11 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2015-04-27 11:11 UTC (permalink / raw
To: gentoo-commits
commit: ada126f6eddf67c7a11945c947246b5e22be20b4
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Apr 27 11:11:33 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Apr 27 11:11:33 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ada126f6
sci-biology/minced: new package; the /usr/bin/minced wrapper for the minced.jar does not work
Package-Manager: portage-2.2.18
sci-biology/minced/ChangeLog | 10 ++++++++++
sci-biology/minced/metadata.xml | 9 +++++++++
sci-biology/minced/minced-9999.ebuild | 29 +++++++++++++++++++++++++++++
3 files changed, 48 insertions(+)
diff --git a/sci-biology/minced/ChangeLog b/sci-biology/minced/ChangeLog
new file mode 100644
index 0000000..7b11290
--- /dev/null
+++ b/sci-biology/minced/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/minced
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*minced-9999 (27 Apr 2015)
+
+ 27 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+ +minced-9999.ebuild:
+ sci-biology/minced: new package; the /usr/bin/minced wrapper for the
+ minced.jar does not work
diff --git a/sci-biology/minced/metadata.xml b/sci-biology/minced/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/minced/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/minced/minced-9999.ebuild b/sci-biology/minced/minced-9999.ebuild
new file mode 100644
index 0000000..04ec64a
--- /dev/null
+++ b/sci-biology/minced/minced-9999.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit git-r3 java-pkg-2
+
+DESCRIPTION="Short Palindromic Repeat finder tool (for CRISPRs)"
+HOMEPAGE="https://github.com/ctSkennerton/minced/tree/master"
+EGIT_REPO_URI="https://github.com/ctSkennerton/minced.git"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=">=virtual/jdk-1.7"
+RDEPEND=">=virtual/jre-1.7"
+
+src_compile(){
+ emake
+}
+
+src_install(){
+ java-pkg_newjar minced.jar
+ java-pkg_dolauncher minced --jar minced.jar # --main minced.minced
+ dodoc README
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/minced/
@ 2015-04-29 19:35 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2015-04-29 19:35 UTC (permalink / raw
To: gentoo-commits
commit: 1372bd3b02d18aa6c14beaccb441c25087f53570
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Apr 29 19:34:53 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Apr 29 19:34:53 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1372bd3b
sci-biology/minced: fixed the launcher
Package-Manager: portage-2.2.18
sci-biology/minced/ChangeLog | 3 +++
sci-biology/minced/minced-9999.ebuild | 4 ++--
2 files changed, 5 insertions(+), 2 deletions(-)
diff --git a/sci-biology/minced/ChangeLog b/sci-biology/minced/ChangeLog
index 7b11290..f1317dd 100644
--- a/sci-biology/minced/ChangeLog
+++ b/sci-biology/minced/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 29 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> minced-9999.ebuild:
+ sci-biology/minced: fixed the launcher
+
*minced-9999 (27 Apr 2015)
27 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
diff --git a/sci-biology/minced/minced-9999.ebuild b/sci-biology/minced/minced-9999.ebuild
index 04ec64a..05e06f1 100644
--- a/sci-biology/minced/minced-9999.ebuild
+++ b/sci-biology/minced/minced-9999.ebuild
@@ -23,7 +23,7 @@ src_compile(){
}
src_install(){
- java-pkg_newjar minced.jar
- java-pkg_dolauncher minced --jar minced.jar # --main minced.minced
+ java-pkg_dojar minced.jar
+ java-pkg_dolauncher
dodoc README
}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/minced/
@ 2015-06-05 11:20 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-06-05 11:20 UTC (permalink / raw
To: gentoo-commits
commit: bda90ec6877c33981241b027615ed9826d19e16a
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 5 11:06:01 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 5 11:06:01 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bda90ec6
sci-biology/minced: Add github to remote-id in metadata.xml
Package-Manager: portage-2.2.20
sci-biology/minced/ChangeLog | 3 +++
sci-biology/minced/metadata.xml | 3 +++
2 files changed, 6 insertions(+)
diff --git a/sci-biology/minced/ChangeLog b/sci-biology/minced/ChangeLog
index f1317dd..8f2fcc3 100644
--- a/sci-biology/minced/ChangeLog
+++ b/sci-biology/minced/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 05 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
+ sci-biology/minced: Add github to remote-id in metadata.xml
+
29 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> minced-9999.ebuild:
sci-biology/minced: fixed the launcher
diff --git a/sci-biology/minced/metadata.xml b/sci-biology/minced/metadata.xml
index 2bc8930..193c482 100644
--- a/sci-biology/minced/metadata.xml
+++ b/sci-biology/minced/metadata.xml
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="github">ctSkennerton/minced/tree/master</remote-id>
+ </upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/minced/
@ 2021-03-06 12:28 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-03-06 12:28 UTC (permalink / raw
To: gentoo-commits
commit: 389af155ff24dbb86037434160416f781e09e9e3
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar 6 12:28:17 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar 6 12:28:17 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=389af155
sci-biology/minced: EAPI bump, add keywords
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
.../{minced-9999.ebuild => minced-0.4.2.ebuild} | 19 +++++++------------
1 file changed, 7 insertions(+), 12 deletions(-)
diff --git a/sci-biology/minced/minced-9999.ebuild b/sci-biology/minced/minced-0.4.2.ebuild
similarity index 52%
rename from sci-biology/minced/minced-9999.ebuild
rename to sci-biology/minced/minced-0.4.2.ebuild
index e9884583e..ed2609e4a 100644
--- a/sci-biology/minced/minced-9999.ebuild
+++ b/sci-biology/minced/minced-0.4.2.ebuild
@@ -1,28 +1,23 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-inherit git-r3 java-pkg-2
+inherit java-pkg-2
DESCRIPTION="Short Palindromic Repeat finder tool (for CRISPRs)"
-HOMEPAGE="https://github.com/ctSkennerton/minced/tree/master"
-EGIT_REPO_URI="https://github.com/ctSkennerton/minced.git"
+HOMEPAGE="https://github.com/ctSkennerton/minced"
+SRC_URI="https://github.com/ctSkennerton/minced/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
-KEYWORDS=""
-IUSE=""
+KEYWORDS="~amd64"
DEPEND=">=virtual/jdk-1.7"
RDEPEND=">=virtual/jre-1.7"
-src_compile(){
- default
-}
-
src_install(){
java-pkg_dojar minced.jar
java-pkg_dolauncher
- dodoc README
+ einstalldocs
}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/minced/
@ 2021-03-16 18:09 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-03-16 18:09 UTC (permalink / raw
To: gentoo-commits
commit: 000bf66a1f3eead559a19c1810d2ca0b66b06f93
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Mar 16 18:09:32 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Mar 16 18:09:32 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=000bf66a
sci-biology/minced: fix build
turns out the jar file was only generated if
FEATURES="test",
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/minced/minced-0.4.2.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/minced/minced-0.4.2.ebuild b/sci-biology/minced/minced-0.4.2.ebuild
index ed2609e4a..b9845e859 100644
--- a/sci-biology/minced/minced-0.4.2.ebuild
+++ b/sci-biology/minced/minced-0.4.2.ebuild
@@ -3,7 +3,7 @@
EAPI=7
-inherit java-pkg-2
+inherit java-pkg-2 java-pkg-simple
DESCRIPTION="Short Palindromic Repeat finder tool (for CRISPRs)"
HOMEPAGE="https://github.com/ctSkennerton/minced"
^ permalink raw reply related [flat|nested] 5+ messages in thread
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