From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 0E09913835A for ; Sat, 6 Mar 2021 11:34:09 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id EFDB4E0869; Sat, 6 Mar 2021 11:34:07 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id A87CFE0866 for ; Sat, 6 Mar 2021 11:34:07 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 2BA35340E8A for ; Sat, 6 Mar 2021 11:34:06 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 96096567 for ; Sat, 6 Mar 2021 11:34:04 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1615030439.0ab5b07fa7e7699f34c1c2463d1607156b354487.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/jellyfish/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/jellyfish/jellyfish-2.1.3-r1.ebuild sci-biology/jellyfish/jellyfish-2.1.4-r1.ebuild sci-biology/jellyfish/jellyfish-2.2.10.ebuild X-VCS-Directories: sci-biology/jellyfish/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 0ab5b07fa7e7699f34c1c2463d1607156b354487 X-VCS-Branch: master Date: Sat, 6 Mar 2021 11:34:04 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 185f85d9-e710-4595-b019-61b47fbaaab9 X-Archives-Hash: ebbc0da9d72f0be364a88e52fe36a5f6 commit: 0ab5b07fa7e7699f34c1c2463d1607156b354487 Author: Andrew Ammerlaan riseup net> AuthorDate: Sat Mar 6 11:33:59 2021 +0000 Commit: Andrew Ammerlaan riseup net> CommitDate: Sat Mar 6 11:33:59 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ab5b07f sci-biology/jellyfish: cleanup old Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/jellyfish/jellyfish-2.1.3-r1.ebuild | 45 ---------------------- sci-biology/jellyfish/jellyfish-2.1.4-r1.ebuild | 45 ---------------------- sci-biology/jellyfish/jellyfish-2.2.10.ebuild | 51 ------------------------- 3 files changed, 141 deletions(-) diff --git a/sci-biology/jellyfish/jellyfish-2.1.3-r1.ebuild b/sci-biology/jellyfish/jellyfish-2.1.3-r1.ebuild deleted file mode 100644 index 5404d6bfb..000000000 --- a/sci-biology/jellyfish/jellyfish-2.1.3-r1.ebuild +++ /dev/null @@ -1,45 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils flag-o-matic - -DESCRIPTION="k-mer counter within reads for assemblies" -HOMEPAGE="http://www.genome.umd.edu/jellyfish.html" -SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz - ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf" - -# older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11 - -LICENSE="GPL-3+ BSD" -SLOT="2" -KEYWORDS="~amd64 ~x86" -IUSE="cpu_flags_x86_sse" - -DEPEND="" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -src_prepare(){ - # --with-sse enable SSE - # --with-half enable half float (16 bits) - # --with-int128 enable int128 - local myconf - use cpu_flags_x86_sse && myconf+=( --with-sse ) - econf ${myconf[@]} - eapply_user -} - -src_install(){ - default - mv "${ED}"/usr/bin/jellyfish "${ED}"/usr/bin/jellyfish2 || die - sed -e "s#jellyfish-${PV}#jellyfish#" -i "${ED}/usr/$(get_libdir)"/pkgconfig/jellyfish-2.0.pc || die - find "${ED}"/usr/include/"${P}"/"${PN}" -type f | while read f; do - sed -e "s#include