[gentoo-commits] proj/sci:master commit in: sci-biology/cast-bin/

[gentoo-commits] proj/sci:master commit in: sci-biology/cast-bin/

[Martin Mokrejs]

commit:     e8a05912f28739d65c2f1df6c31efaf95a138e59
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jan  6 18:09:12 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jan  6 18:09:12 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e8a05912

sci-biology/cast-bin: new package

Package-Manager: portage-2.2.26

 sci-biology/cast-bin/ChangeLog                |  9 ++++++++
 sci-biology/cast-bin/cast-bin-20080813.ebuild | 32 +++++++++++++++++++++++++++
 sci-biology/cast-bin/metadata.xml             |  9 ++++++++
 3 files changed, 50 insertions(+)

diff --git a/sci-biology/cast-bin/ChangeLog b/sci-biology/cast-bin/ChangeLog
new file mode 100644
index 0000000..aff5d4a
--- /dev/null
+++ b/sci-biology/cast-bin/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/cast-bin
+# Copyright 1999-2016 Gentoo Foundation; Distributed under the GPL v2
+# $Id$
+
+*cast-bin-20080813 (06 Jan 2016)
+
+  06 Jan 2016; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +cast-bin-20080813.ebuild, +metadata.xml:
+  sci-biology/cast-bin: new package

diff --git a/sci-biology/cast-bin/cast-bin-20080813.ebuild b/sci-biology/cast-bin/cast-bin-20080813.ebuild
new file mode 100644
index 0000000..6f3add2
--- /dev/null
+++ b/sci-biology/cast-bin/cast-bin-20080813.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Predict low-complexity regions in putative proteins"
+HOMEPAGE="http://bioinformatics.cenargen.embrapa.br/portrait/download"
+SRC_URI="http://bioinformatics.cenargen.embrapa.br/portrait/download/cast-linux.tar.gz"
+
+# in 2000 in http://bioinformatics.oxfordjournals.org/content/16/10/915
+# authors stated:
+#   Availability: CAST (version 1.0) executable binaries are available to academic users free
+#   of charge under license. Web site entry point, server and additional material:
+#   http://www.ebi.ac.uk/research/cgg/services/cast/
+#
+# but the license file included in cast-linux.tar.gz from 2002 contains GPL-2 license
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/cast-linux
+
+src_install(){
+	dobin cast
+	dodoc README
+}

diff --git a/sci-biology/cast-bin/metadata.xml b/sci-biology/cast-bin/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/cast-bin/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/cast-bin/

[Andrew Ammerlaan]

commit:     645bb242ac560f08f3bb03007d9a36b22c4256f4
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 10:09:50 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 10:09:50 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=645bb242

sci-biology/cast-bin: EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/cast-bin/cast-bin-20080813.ebuild | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/sci-biology/cast-bin/cast-bin-20080813.ebuild b/sci-biology/cast-bin/cast-bin-20080813.ebuild
index c0c8992c4..4628fe3f6 100644
--- a/sci-biology/cast-bin/cast-bin-20080813.ebuild
+++ b/sci-biology/cast-bin/cast-bin-20080813.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 DESCRIPTION="Predict low-complexity regions in putative proteins"
 HOMEPAGE="http://bioinformatics.cenargen.embrapa.br/portrait/download"
@@ -18,7 +18,6 @@ SRC_URI="http://bioinformatics.cenargen.embrapa.br/portrait/download/cast-linux.
 LICENSE="GPL-2"
 SLOT="0"
 KEYWORDS="~amd64"
-IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}"