[gentoo-commits] proj/sci:master commit in: sci-biology/bedops/

[gentoo-commits] proj/sci:master commit in: sci-biology/bedops/

[Justin Lecher]

commit:     1ef384168f532e750c2c925cde2487d1b27fb459
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Apr 29 18:22:00 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Apr 29 18:22:00 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1ef38416

Add new remote ID

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/bedops/metadata.xml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/sci-biology/bedops/metadata.xml b/sci-biology/bedops/metadata.xml
index f68a1b6fa..275007996 100644
--- a/sci-biology/bedops/metadata.xml
+++ b/sci-biology/bedops/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer type="person">
@@ -9,4 +9,7 @@
     <email>sci-biology@gentoo.org</email>
     <name>Gentoo Biology Project</name>
   </maintainer>
+  <upstream>
+    <remote-id type="github">bedops/bedops</remote-id>
+  </upstream>
 </pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/bedops/

[Martin Mokrejs]

commit:     2a28ea64417794f6c09e39345fec05445ff8ae44
Author:     Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Fri Dec 18 10:53:44 2020 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Dec 18 10:54:07 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=2a28ea64

sci-biology/bedops: fix install procedure

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>

 sci-biology/bedops/bedops-2.4.26.ebuild | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/sci-biology/bedops/bedops-2.4.26.ebuild b/sci-biology/bedops/bedops-2.4.26.ebuild
index d281fbede..4ae167a08 100644
--- a/sci-biology/bedops/bedops-2.4.26.ebuild
+++ b/sci-biology/bedops/bedops-2.4.26.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -23,3 +23,9 @@ src_prepare(){
 	local PATCHES=("${FILESDIR}"/${P}-respect-cxxflags.patch)
 	epatch ${PATCHES[@]}
 }
+
+src_install(){
+	emake install
+	dobin bin/*
+	dodoc README.md
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/bedops/

[Andrew Ammerlaan]

commit:     9ee2acd37be1d4f134e871e0c596d916d7d4368a
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 09:36:00 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 09:36:00 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=9ee2acd3

sci-biology/bedops: version bump EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/bedops/bedops-2.4.39.ebuild | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/sci-biology/bedops/bedops-2.4.39.ebuild b/sci-biology/bedops/bedops-2.4.39.ebuild
new file mode 100644
index 000000000..3f8f956bb
--- /dev/null
+++ b/sci-biology/bedops/bedops-2.4.39.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit toolchain-funcs
+
+DESCRIPTION="Manipulate BED file (alternative to bedtools)"
+HOMEPAGE="http://bedops.readthedocs.io
+	https://github.com/bedops/bedops"
+SRC_URI="https://github.com/bedops/bedops/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_install(){
+	emake install
+	dobin bin/*
+	dodoc README.md
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/bedops/

[Andrew Ammerlaan]

commit:     ed8933c21d757ecbedbe330621af864ab0cbf6b2
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Mar 16 18:22:13 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Mar 16 18:22:13 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ed8933c2

sci-biology/bedops: fixup the old version

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/bedops/bedops-2.4.26.ebuild | 16 ++++------------
 1 file changed, 4 insertions(+), 12 deletions(-)

diff --git a/sci-biology/bedops/bedops-2.4.26.ebuild b/sci-biology/bedops/bedops-2.4.26.ebuild
index 4ae167a08..0bdabc617 100644
--- a/sci-biology/bedops/bedops-2.4.26.ebuild
+++ b/sci-biology/bedops/bedops-2.4.26.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-inherit toolchain-funcs eutils
+inherit toolchain-funcs
 
 DESCRIPTION="Manipulate BED file (alternative to bedtools)"
 HOMEPAGE="http://bedops.readthedocs.io
@@ -13,16 +13,8 @@ SRC_URI="https://github.com/bedops/bedops/archive/v${PV}.tar.gz -> ${P}.tar.gz"
 LICENSE="GPL-2"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE=""
 
-DEPEND=""
-RDEPEND="${DEPEND}"
-
-src_prepare(){
-	default
-	local PATCHES=("${FILESDIR}"/${P}-respect-cxxflags.patch)
-	epatch ${PATCHES[@]}
-}
+PATCHES=( "${FILESDIR}"/${P}-respect-cxxflags.patch )
 
 src_install(){
 	emake install