* [gentoo-commits] proj/sci:master commit in: sci-biology/StarORF/
@ 2015-05-06 13:19 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2015-05-06 13:19 UTC (permalink / raw
To: gentoo-commits
commit: ffc9e55fad6ad12de3ef627b82684c7cfacb4ba8
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed May 6 13:19:09 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed May 6 13:19:09 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ffc9e55f
sci-biology/StarORF: new package, somehow build.xml needs dev-java/jreleaseinfo but it does not see it: 'build.xml:3: taskdef class ch.oscg.jreleaseinfo.anttask.JReleaseInfoAntTask cannot be found'
Package-Manager: portage-2.2.18
sci-biology/StarORF/ChangeLog | 11 +++++++++++
sci-biology/StarORF/StarORF-9999.ebuild | 32 ++++++++++++++++++++++++++++++++
sci-biology/StarORF/metadata.xml | 9 +++++++++
3 files changed, 52 insertions(+)
diff --git a/sci-biology/StarORF/ChangeLog b/sci-biology/StarORF/ChangeLog
new file mode 100644
index 0000000..d1fbadf
--- /dev/null
+++ b/sci-biology/StarORF/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/StarORF
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*StarORF-9999 (06 May 2015)
+
+ 06 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +StarORF-9999.ebuild, +metadata.xml:
+ sci-biology/StarORF: new package, somehow build.xml needs dev-
+ java/jreleaseinfo but it does not see it: 'build.xml:3: taskdef class
+ ch.oscg.jreleaseinfo.anttask.JReleaseInfoAntTask cannot be found'
diff --git a/sci-biology/StarORF/StarORF-9999.ebuild b/sci-biology/StarORF/StarORF-9999.ebuild
new file mode 100644
index 0000000..2affa2e
--- /dev/null
+++ b/sci-biology/StarORF/StarORF-9999.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-2 java-ant-2
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Java-based utility to show ORFs in a sequence"
+HOMEPAGE="http://star.mit.edu/orf"
+EGIT_REPO_URI="https://github.com/starteam/starorf_java.git"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+ >=virtual/jdk-1.5:*
+ dev-java/jreleaseinfo"
+RDEPEND="${DEPEND}
+ >=virtual/jre-1.5:*"
+
+#src_compile() {
+# ant compile || die
+#}
+
+src_install() {
+ java-pkg_dojar StarORF.jar
+}
diff --git a/sci-biology/StarORF/metadata.xml b/sci-biology/StarORF/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/StarORF/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/StarORF/
@ 2016-02-14 17:32 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2016-02-14 17:32 UTC (permalink / raw
To: gentoo-commits
commit: 560144ec21f704498e081aa15e29624a2f81c52a
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 14 17:30:54 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb 14 17:30:54 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=560144ec
sci-biology/StarORF: Bump to EAPI=6
* Use git-r3.eclass
Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/StarORF/StarORF-9999.ebuild | 8 +++-----
sci-biology/StarORF/metadata.xml | 2 +-
2 files changed, 4 insertions(+), 6 deletions(-)
diff --git a/sci-biology/StarORF/StarORF-9999.ebuild b/sci-biology/StarORF/StarORF-9999.ebuild
index 8be5660..555d2ba 100644
--- a/sci-biology/StarORF/StarORF-9999.ebuild
+++ b/sci-biology/StarORF/StarORF-9999.ebuild
@@ -1,12 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
-inherit java-pkg-2 java-ant-2
-
-[ "$PV" == "9999" ] && inherit git-2
+inherit java-pkg-2 java-ant-2 git-r3
DESCRIPTION="Java-based utility to show ORFs in a sequence"
HOMEPAGE="http://star.mit.edu/orf"
diff --git a/sci-biology/StarORF/metadata.xml b/sci-biology/StarORF/metadata.xml
index 1699e58..f68a1b6 100644
--- a/sci-biology/StarORF/metadata.xml
+++ b/sci-biology/StarORF/metadata.xml
@@ -5,7 +5,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
-<maintainer type="project">
+ <maintainer type="project">
<email>sci-biology@gentoo.org</email>
<name>Gentoo Biology Project</name>
</maintainer>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/StarORF/
@ 2021-03-05 18:32 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-03-05 18:32 UTC (permalink / raw
To: gentoo-commits
commit: bab2844a86d5f9a250bfb32e3b09b26d451270a8
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Mar 5 18:32:12 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Mar 5 18:32:12 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bab2844a
sci-biology/StarORF: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/StarORF/StarORF-9999.ebuild | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
diff --git a/sci-biology/StarORF/StarORF-9999.ebuild b/sci-biology/StarORF/StarORF-9999.ebuild
index 2dc2663f7..eb24ff954 100644
--- a/sci-biology/StarORF/StarORF-9999.ebuild
+++ b/sci-biology/StarORF/StarORF-9999.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
inherit java-pkg-2 java-ant-2 git-r3
@@ -12,17 +12,17 @@ EGIT_REPO_URI="https://github.com/starteam/starorf_java.git"
LICENSE="BSD-2"
SLOT="0"
KEYWORDS=""
-IUSE=""
DEPEND="
>=virtual/jdk-1.5:*
- dev-java/jreleaseinfo"
+ dev-java/jreleaseinfo:0"
RDEPEND="${DEPEND}
>=virtual/jre-1.5:*"
-#src_compile() {
-# ant compile || die
-#}
+src_prepare() {
+ default
+ java-pkg_jar-from --into lib jreleaseinfo
+}
src_install() {
java-pkg_dojar StarORF.jar
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/StarORF/
@ 2021-06-01 9:21 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-06-01 9:21 UTC (permalink / raw
To: gentoo-commits
commit: 5e50343bfb268700f4f9119a3f32ceb1c2dae8f7
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 1 09:20:42 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jun 1 09:20:42 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5e50343b
sci-biology/StarORF: remove pack
deps not available, no upstream activity since 2015
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/StarORF/StarORF-9999.ebuild | 29 -----------------------------
sci-biology/StarORF/metadata.xml | 12 ------------
2 files changed, 41 deletions(-)
diff --git a/sci-biology/StarORF/StarORF-9999.ebuild b/sci-biology/StarORF/StarORF-9999.ebuild
deleted file mode 100644
index eb24ff954..000000000
--- a/sci-biology/StarORF/StarORF-9999.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit java-pkg-2 java-ant-2 git-r3
-
-DESCRIPTION="Java-based utility to show ORFs in a sequence"
-HOMEPAGE="http://star.mit.edu/orf"
-EGIT_REPO_URI="https://github.com/starteam/starorf_java.git"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS=""
-
-DEPEND="
- >=virtual/jdk-1.5:*
- dev-java/jreleaseinfo:0"
-RDEPEND="${DEPEND}
- >=virtual/jre-1.5:*"
-
-src_prepare() {
- default
- java-pkg_jar-from --into lib jreleaseinfo
-}
-
-src_install() {
- java-pkg_dojar StarORF.jar
-}
diff --git a/sci-biology/StarORF/metadata.xml b/sci-biology/StarORF/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/StarORF/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
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