* [gentoo-commits] proj/sci:master commit in: sci-biology/ParaAT/
@ 2019-03-07 18:41 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2019-03-07 18:41 UTC (permalink / raw
To: gentoo-commits
commit: 70ea861437459dc2b1637d75098132578282b6f0
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 7 18:39:01 2019 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 7 18:39:01 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=70ea8614
sci-biology/ParaAT: new package
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
sci-biology/ParaAT/ParaAT-1.0.ebuild | 29 +++++++++++++++++++++++++++++
sci-biology/ParaAT/metadata.xml | 12 ++++++++++++
2 files changed, 41 insertions(+)
diff --git a/sci-biology/ParaAT/ParaAT-1.0.ebuild b/sci-biology/ParaAT/ParaAT-1.0.ebuild
new file mode 100644
index 000000000..9339b121e
--- /dev/null
+++ b/sci-biology/ParaAT/ParaAT-1.0.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="Create multiple protein-coding DNA alignments and back-Translation"
+HOMEPAGE="https://code.google.com/p/paraat
+ http://cbb.big.ac.cn/software
+ https://www.sciencedirect.com/science/article/pii/S0006291X12003518"
+SRC_URI="https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/paraat/${PN}${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-lang/perl"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${PN}${PV}"
+
+src_prepare(){
+ rm -f ._Epal2nal.pl ._ParaAT.pl
+}
+
+src_install(){
+ dobin *.pl
+ dodoc readme.txt
+}
diff --git a/sci-biology/ParaAT/metadata.xml b/sci-biology/ParaAT/metadata.xml
new file mode 100644
index 000000000..138cb7705
--- /dev/null
+++ b/sci-biology/ParaAT/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ParaAT/
@ 2019-03-07 18:48 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2019-03-07 18:48 UTC (permalink / raw
To: gentoo-commits
commit: b89f5830731c5051879f16da515be37ad14eab10
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 7 18:47:51 2019 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 7 18:47:51 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b89f5830
sci-biology/ParaAT: add missing default in src_prepare()
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
sci-biology/ParaAT/ParaAT-1.0.ebuild | 1 +
1 file changed, 1 insertion(+)
diff --git a/sci-biology/ParaAT/ParaAT-1.0.ebuild b/sci-biology/ParaAT/ParaAT-1.0.ebuild
index 9339b121e..d806d90eb 100644
--- a/sci-biology/ParaAT/ParaAT-1.0.ebuild
+++ b/sci-biology/ParaAT/ParaAT-1.0.ebuild
@@ -21,6 +21,7 @@ S="${WORKDIR}/${PN}${PV}"
src_prepare(){
rm -f ._Epal2nal.pl ._ParaAT.pl
+ default
}
src_install(){
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ParaAT/
@ 2021-01-20 9:06 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-01-20 9:06 UTC (permalink / raw
To: gentoo-commits
commit: c9c6b1f21b8c8d211c5c3bdd8fc6cf08fc36d8d7
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Jan 20 09:03:50 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Jan 20 09:03:50 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c9c6b1f2
sci-biology/ParaAT: update homepage
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/ParaAT/ParaAT-1.0.ebuild | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/sci-biology/ParaAT/ParaAT-1.0.ebuild b/sci-biology/ParaAT/ParaAT-1.0.ebuild
index d806d90eb..22683fab0 100644
--- a/sci-biology/ParaAT/ParaAT-1.0.ebuild
+++ b/sci-biology/ParaAT/ParaAT-1.0.ebuild
@@ -1,11 +1,10 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
DESCRIPTION="Create multiple protein-coding DNA alignments and back-Translation"
-HOMEPAGE="https://code.google.com/p/paraat
- http://cbb.big.ac.cn/software
+HOMEPAGE="http://cbb.big.ac.cn/software
https://www.sciencedirect.com/science/article/pii/S0006291X12003518"
SRC_URI="https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/paraat/${PN}${PV}.tar.gz -> ${P}.tar.gz"
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ParaAT/
@ 2021-03-05 15:41 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-03-05 15:41 UTC (permalink / raw
To: gentoo-commits
commit: 7f11a212605fb87633d46a6e7b197275b761618d
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Mar 5 15:38:32 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Mar 5 15:38:32 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7f11a212
sci-biology/ParaAT: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/ParaAT/ParaAT-1.0.ebuild | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/sci-biology/ParaAT/ParaAT-1.0.ebuild b/sci-biology/ParaAT/ParaAT-1.0.ebuild
index 22683fab0..fd2007274 100644
--- a/sci-biology/ParaAT/ParaAT-1.0.ebuild
+++ b/sci-biology/ParaAT/ParaAT-1.0.ebuild
@@ -1,7 +1,7 @@
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
DESCRIPTION="Create multiple protein-coding DNA alignments and back-Translation"
HOMEPAGE="http://cbb.big.ac.cn/software
@@ -11,7 +11,6 @@ SRC_URI="https://storage.googleapis.com/google-code-archive-downloads/v2/code.go
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
DEPEND="dev-lang/perl"
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 4+ messages in thread
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