[gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/

["Michał Górny" <mgorny@gentoo.org>]

commit:     943c4d44d3dab54de0cad6c83c03a3afef32f08a
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Tue Mar  2 13:03:55 2021 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Tue Mar  2 14:13:58 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=943c4d44

dev-python/pandas: Bump to 1.2.3

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/pandas/Manifest            |   1 +
 dev-python/pandas/pandas-1.2.3.ebuild | 186 ++++++++++++++++++++++++++++++++++
 2 files changed, 187 insertions(+)

diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index e20c78541e1..427b0bec894 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,3 +1,4 @@
 DIST pandas-1.1.5.tar.gz 5229894 BLAKE2B 5b47774e33c7fccd7a9110e8971e8ce63cafd68273ee870b386aa8562be4c8f667137a4a078eafb2a62847bdd6f73c390254e8024d483c21e1834a8c49d44d32 SHA512 a213690ea658554b78e003a30cc88a59e34195457401d84b1cafdf74433ad27c801c12b8138371bb0206f6dc083ae882eabf0e33cb5733fa313e9f3257d48823
 DIST pandas-1.2.1.tar.gz 5459053 BLAKE2B 49d99e7217d52f1233cdff20628da9028b7a8ce1d89a5ebe502c6e960ca9f7948005e7a63a15b76f9bc44ab5f15e00eef86c3b3179e6cad820e6f5072c7c78f0 SHA512 9bf9212ebdd07785f1877f5f80d6a5beb4637e8a1cf741e32a705a48724280a8e8daae209c66c1a3f00718b566127d77af578d6c72a5d9b68e2b03784c604083
 DIST pandas-1.2.2.tar.gz 5463571 BLAKE2B e27e032bb9d6abb6f40d1a15bc7e9796690f0bd099e5fc7704cbd5b40b37c0f277b462116bd7582263abef8f728d3109f6c4c425cac427f0c750b019fd5e8ad8 SHA512 288ec9f3a2042c2a376340ddc25b4e2d9d3c4de146468316378269d4b70fb271241acb9aa5295415d8bebabad859a9ea9dc95aa71a68f06c2eba73809b9b30e2
+DIST pandas-1.2.3.tar.gz 5466356 BLAKE2B f392321915128769814b3a8b7673cd7b00c9c292f4cb8d8b2e8537f7cc513f92cb6b8ff74dffe3b167987e8fa387738264dbebfdf4019f9cd7afd4f78234212a SHA512 3108424253aa143a85ef166091829bbd8c9b6446b516f37252742146d184f722e1fb8af5b4d04937362a298068019a91392e40c818126df6a7459bab7f3077cb

diff --git a/dev-python/pandas/pandas-1.2.3.ebuild b/dev-python/pandas/pandas-1.2.3.ebuild
new file mode 100644
index 00000000000..2bfbf0f7609
--- /dev/null
+++ b/dev-python/pandas/pandas-1.2.3.ebuild
@@ -0,0 +1,186 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_REQ_USE="threads(+)"
+
+VIRTUALX_REQUIRED="manual"
+
+inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx
+
+DESCRIPTION="Powerful data structures for data analysis and statistics"
+HOMEPAGE="https://pandas.pydata.org/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz"
+S="${WORKDIR}/${P/_/}"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~arm ~arm64 ~x86"
+IUSE="doc full-support minimal test X"
+RESTRICT="!test? ( test )"
+
+RECOMMENDED_DEPEND="
+	>=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
+	>=dev-python/numexpr-2.1[${PYTHON_USEDEP}]
+"
+
+# TODO: add pandas-gbq to the tree
+OPTIONAL_DEPEND="
+	dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+	dev-python/blosc[${PYTHON_USEDEP}]
+	|| (
+		dev-python/html5lib[${PYTHON_USEDEP}]
+		dev-python/lxml[${PYTHON_USEDEP}]
+	)
+	dev-python/jinja[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	|| (
+		dev-python/openpyxl[${PYTHON_USEDEP}]
+		dev-python/xlsxwriter[${PYTHON_USEDEP}]
+	)
+	>=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
+	dev-python/statsmodels[${PYTHON_USEDEP}]
+	$(python_gen_cond_dep '
+		>=dev-python/xarray-0.10.8[${PYTHON_USEDEP}]
+	' python3_{6,7})
+	>=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}]
+	>=dev-python/xlrd-1.0.0[${PYTHON_USEDEP}]
+	dev-python/xlwt[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.1[${PYTHON_USEDEP}]
+	X? (
+		|| (
+			dev-python/PyQt5[${PYTHON_USEDEP}]
+			x11-misc/xclip
+			x11-misc/xsel
+		)
+	)
+"
+COMMON_DEPEND="
+	>dev-python/numpy-1.15.4[${PYTHON_USEDEP}]
+	dev-python/python-dateutil[${PYTHON_USEDEP}]
+	dev-python/pytz[${PYTHON_USEDEP}]
+"
+DEPEND="${COMMON_DEPEND}
+	>=dev-python/cython-0.29.21[${PYTHON_USEDEP}]
+	doc? (
+		${VIRTUALX_DEPEND}
+		app-text/pandoc
+		dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+		dev-python/html5lib[${PYTHON_USEDEP}]
+		dev-python/ipython[${PYTHON_USEDEP}]
+		dev-python/lxml[${PYTHON_USEDEP}]
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		dev-python/nbsphinx[${PYTHON_USEDEP}]
+		>=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
+		>=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
+		>=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
+		dev-python/pytz[${PYTHON_USEDEP}]
+		dev-python/rpy[${PYTHON_USEDEP}]
+		dev-python/sphinx[${PYTHON_USEDEP}]
+		dev-python/xlrd[${PYTHON_USEDEP}]
+		dev-python/xlwt[${PYTHON_USEDEP}]
+		dev-python/scipy[${PYTHON_USEDEP}]
+		x11-misc/xclip
+	)
+	test? (
+		${VIRTUALX_DEPEND}
+		${RECOMMENDED_DEPEND}
+		${OPTIONAL_DEPEND}
+		dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+		dev-python/hypothesis[${PYTHON_USEDEP}]
+		dev-python/nose[${PYTHON_USEDEP}]
+		dev-python/openpyxl[${PYTHON_USEDEP}]
+		dev-python/pymysql[${PYTHON_USEDEP}]
+		>=dev-python/pytest-5.1[${PYTHON_USEDEP}]
+		dev-python/pytest-mock[${PYTHON_USEDEP}]
+		dev-python/pytest-xdist[${PYTHON_USEDEP}]
+		dev-python/psycopg:2[${PYTHON_USEDEP}]
+		dev-python/xlsxwriter[${PYTHON_USEDEP}]
+		x11-misc/xclip
+		x11-misc/xsel
+	)
+"
+# dev-python/statsmodels invokes a circular dep
+#  hence rm from doc? ( ), again
+RDEPEND="${COMMON_DEPEND}
+	!minimal? ( ${RECOMMENDED_DEPEND} )
+	full-support? ( ${OPTIONAL_DEPEND} )
+"
+
+python_prepare_all() {
+	# Prevent un-needed download during build
+	sed -e "/^              'sphinx.ext.intersphinx',/d" \
+		-i doc/source/conf.py || die
+
+	# requires package installed
+	sed -e '/extra_compile_args =/s:"-Werror"::' \
+		-i setup.py || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	# To build docs the need be located in $BUILD_DIR,
+	# else PYTHONPATH points to unusable modules.
+	if use doc; then
+		cd "${BUILD_DIR}"/lib || die
+		cp -ar "${S}"/doc . && cd doc || die
+		LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
+	fi
+}
+
+src_test() {
+	virtx distutils-r1_src_test
+}
+
+python_test() {
+	local deselect=(
+		# broken on practically any hardware/CFLAGS but the one
+		# the patch author was using
+		# https://github.com/pandas-dev/pandas/issues/38921
+		pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
+
+		# weird issue, doesn't seem very important
+		'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]'
+	)
+
+	local -x LC_ALL=C.UTF-8
+	pushd "${BUILD_DIR}"/lib > /dev/null || die
+	"${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+	PYTHONPATH=. pytest pandas -vv --skip-slow --skip-network \
+		${deselect[@]/#/--deselect } \
+		-n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" \
+		-m "not single" || die "Tests failed with ${EPYTHON}"
+	find . '(' -name .pytest_cache -o -name .hypothesis ')' \
+		-exec rm -r {} + || die
+	popd > /dev/null || die
+}
+
+python_install_all() {
+	if use doc; then
+		dodoc -r "${BUILD_DIR}"/lib/doc/build/html
+		einfo "An initial build of docs is absent of references to statsmodels"
+		einfo "due to circular dependency. To have them included, emerge"
+		einfo "statsmodels next and re-emerge pandas with USE doc"
+	fi
+
+	distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+	optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
+	optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
+	optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml
+	optfeature "for msgpack compression using blosc" dev-python/blosc
+	optfeature "Template engine for conditional HTML formatting" dev-python/jinja
+	optfeature "Plotting support" dev-python/matplotlib
+	optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+	optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
+	optfeature "R I/O support" dev-python/rpy
+	optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
+	optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1"
+	optfeature "miscellaneous statistical functions" dev-python/scipy
+	optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
+}