[gentoo-commits] proj/sci:master commit in: sci-biology/samstat/, sci-biology/samstat/files/

[gentoo-commits] proj/sci:master commit in: sci-biology/samstat/, sci-biology/samstat/files/

[Jakov Smolić]

commit:     6bc33b33b7c919869ab6c5f03854f10b8b14a030
Author:     Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr>
AuthorDate: Sat Feb 20 20:25:45 2021 +0000
Commit:     Jakov Smolić <jakov.smolic <AT> sartura <DOT> hr>
CommitDate: Sat Feb 20 21:57:41 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6bc33b33

sci-biology/samstat: Port to EAPI 7

Closes: https://bugs.gentoo.org/755773
Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr>

 .../samstat/files/samstat-1.5.1-fno-common.patch   | 31 ++++++++++++++++++++++
 sci-biology/samstat/samstat-1.5.1.ebuild           |  9 +++----
 2 files changed, 35 insertions(+), 5 deletions(-)

diff --git a/sci-biology/samstat/files/samstat-1.5.1-fno-common.patch b/sci-biology/samstat/files/samstat-1.5.1-fno-common.patch
new file mode 100644
index 000000000..d5bed9ed6
--- /dev/null
+++ b/sci-biology/samstat/files/samstat-1.5.1-fno-common.patch
@@ -0,0 +1,31 @@
+--- a/src/nuc_code.c
++++ b/src/nuc_code.c
+@@ -29,6 +29,9 @@
+ #include <stdlib.h>
+ #include "nuc_code.h"
+ 
++unsigned int rev_nuc_code[5];
++unsigned int nuc_code[256];
++
+ 
+ /** \fn void init_nuc_code()
+  \brief Initializes nucleotide conversion arrays. 
+--- a/src/nuc_code.h
++++ b/src/nuc_code.h
+@@ -32,14 +32,14 @@
+  *
+  *
+  */
+-unsigned int nuc_code[256];
++extern unsigned int nuc_code[256];
+ 
+ /**
+  * @brief Converts 0-5 nucleotides into printable ASCII to.
+  *
+  *
+  */
+-unsigned int rev_nuc_code[5];
++extern unsigned int rev_nuc_code[5];
+ 
+ void init_nuc_code(void);
+ 

diff --git a/sci-biology/samstat/samstat-1.5.1.ebuild b/sci-biology/samstat/samstat-1.5.1.ebuild
index cf409eeb0..5f1922467 100644
--- a/sci-biology/samstat/samstat-1.5.1.ebuild
+++ b/sci-biology/samstat/samstat-1.5.1.ebuild
@@ -1,9 +1,7 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
-
-inherit eutils
+EAPI=7
 
 DESCRIPTION="Statistics of BAM/SAM files"
 HOMEPAGE="http://samstat.sourceforge.net" # no https
@@ -12,7 +10,8 @@ SRC_URI="https://sourceforge.net/projects/samstat/files/${P}.tar.gz"
 LICENSE="GPL-3"
 SLOT="0"
 KEYWORDS="~amd64"
-IUSE=""
 
 DEPEND="sci-biology/samtools:="
 RDEPEND="${DEPEND}"
+
+PATCHES=( "${FILESDIR}"/${P}-fno-common.patch )