[gentoo-commits] proj/sci:master commit in: sys-cluster/lmod/files/, sys-cluster/lmod/

["Aisha Tammy" <gentoo@aisha.cc>]

commit:     ecd12f1d4e2e1386bede67c475e89b00537e5b8c
Author:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Sun Feb 14 11:54:39 2021 +0000
Commit:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Sun Feb 14 11:55:01 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ecd12f1d

sys-cluster/lmod: lmod is now in ::gentoo

Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>

 .../lmod/files/lmod-8.4.19-no-libsandbox.patch     |  13 -
 sys-cluster/lmod/files/module.1-8.4.20             | 388 ---------------------
 sys-cluster/lmod/lmod-8.4.20.ebuild                | 125 -------
 sys-cluster/lmod/lmod-9999.ebuild                  | 125 -------
 sys-cluster/lmod/metadata.xml                      |  31 --
 5 files changed, 682 deletions(-)

diff --git a/sys-cluster/lmod/files/lmod-8.4.19-no-libsandbox.patch b/sys-cluster/lmod/files/lmod-8.4.19-no-libsandbox.patch
deleted file mode 100644
index 02248bc45..000000000
--- a/sys-cluster/lmod/files/lmod-8.4.19-no-libsandbox.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/configure.ac b/configure.ac
-index ca75e34c..e9cc49e0 100644
---- a/configure.ac
-+++ b/configure.ac
-@@ -616,7 +616,7 @@ AC_SUBST(SYS_LD_LIB_PATH)
- SYS_LD_LIB_PATH=$LD_LIBRARY_PATH
- 
- AC_SUBST(SYS_LD_PRELOAD)
--SYS_LD_PRELOAD=$LD_PRELOAD
-+SYS_LD_PRELOAD=$(printf %s\\n $LD_PRELOAD | sed -e "s/libsandbox.so//g")
- 
- AC_SUBST(PATH_TO_SRC)
- SRCDIR=$( cd $srcdir; pwd)

diff --git a/sys-cluster/lmod/files/module.1-8.4.20 b/sys-cluster/lmod/files/module.1-8.4.20
deleted file mode 100644
index cbd852dd1..000000000
--- a/sys-cluster/lmod/files/module.1-8.4.20
+++ /dev/null
@@ -1,388 +0,0 @@
-.Dd $Mdocdate: December 6 2020 $
-.Dt MODULE 1
-.Os
-.Sh NAME
-.Nm module
-.Nd lmod environment modules manager
-.Sh SYNOPSIS
-.Nm module
-.Op options
-.Cm sub-command
-.Op args ...
-.Sh DESCRIPTION
-.Nm
-from
-.Sy Lmod
-is a
-.Xr lua 1
-based program to manage the user environment under
-Unix systems, specifically designed to easily handle
-the
-.Ev MODULEPATH
-Hierarchical problem.
-Environment Modules provide a convenient way to
-dynamically change the users' environment through modulefiles.
-This includes easily adding or removing directories to the
-.Ev PATH , LD_LIBRARY_PATH
-and other environment variables.
-.Sh OPTIONS
-The following
-.Ar options
-are available:
-.Pp
-.Bl -tag -width Ds -compact
-.It Fl h , \&? , H , -help
-Show the help message.
-.Pp
-.It Fl -check_syntax , -checkSyntax
-Only check the
-.Nm
-command syntax, do not load any modules.
-.Pp
-.It Fl -config
-Report
-.Sy Lmod
-configuration.
-.Pp
-.It Fl -config_json
-Report
-.Sy Lmod
-configuration in json format.
-.Pp
-.It Fl D
-Write program tracing data to stderr.
-.Pp
-.It Fl d , -default
-List default modules only when used with
-.Cm avail .
-.Pp
-.It Fl -debug Ar dbglvl
-.Sy VALUES :
-1, 2, 3.
-.Pp
-Only write trace output with proper debug levels.
-.Pp
-.It Fl -dumpversion
-Dump version in a machine readable way and quit.
-.Pp
-.It Fl -expert
-Work in expert mode.
-.Pp
-.It Fl -force
-Force removal of a sticky module or save an empty collection.
-.Pp
-.It Fl -gitversion
-Dump git version in a machine readable way and quit.
-.Pp
-.It Fl -ignore_cache
-Treat the cache file(s) as out-of-date.
-.Pp
-.It Fl -initial_load
-Loading Lmod for first time in a user shell.
-.Pp
-.It Fl -latest
-Load latest (ignore default).
-.Pp
-.It Fl -mt
-Report Module Table State.
-.Pp
-.It Fl -no_redirect
-Force output of
-.Cm list ,
-.Cm avail
-and
-.Cm spider
-to stderr.
-.Pp
-.It Fl -novice
-Turn off
-.Fl -expert
-and
-.Fl -quiet
-flags.
-.Pp
-.It Fl -nx , -no_extensions
-.Pp
-.It Fl -pin_versions Ar pinVersions
-When doing a restore use the specified version, do not follow defaults.
-.Pp
-.It Fl q , -quiet
-Do not print out warnings.
-.Pp
-.It Fl r , -regexp
-Use regular expression match.
-.Pp
-.It Fl -raw
-Print modulefile in raw output when used with show.
-.Pp
-.It Fl -redirect
-Send the output of
-.Cm list ,
-.Cm avail
-and
-.Cm spider
-to stdout (not stderr).
-.Pp
-.It Fl -regression_testing
-Lmod regression testing.
-.Pp
-.It Fl -show_hidden
-.Cm avail
-and
-.Cm spider
-will report hidden modules.
-.Pp
-.It Fl -spider_timeout Ar timeout
-A timeout for
-.Cm spider .
-.Pp
-.It Fl s , -style Ar availStyle
-.Sy DEFAULT :
-system
-Site controlled avail style.
-.Pp
-.It Fl T , -trace
-.Pp
-.It Fl t , -terse
-Write out in machine readable format for
-.Cm list ,
-.Cm avail ,
-.Cm spider
-and
-.Cm savelist .
-.Pp
-.It Fl -timer
-Report run times.
-.Pp
-.It Fl v , -version
-Print version info and quit.
-.Pp
-.It Fl -w , -width Ar twidth
-Use
-.Ar twidth
-as max term width.
-.El
-.Sh SUB-COMMANDS
-.Ss HELP
-.Bl -tag -width Ds -compact
-.It Cm help
-Print the help message.
-.Pp
-.It Cm help Ar module Op moduleX moduleY ...
-Print help messages from the given module(s).
-.El
-.Ss LOAD
-.Bl -tag -width Ds -compact
-.It Cm load , add Ar module Op moduleX moduleY ...
-Load module(s)
-.Pp
-.It Cm try-load , try-add Ar module Op moduleX module Y ...
-Load module(s), do not complain if not found
-.Pp
-.It Cm del , unload Ar module Op moduleX moduleY ...
-Unload module(s), does not complain if not found
-.Pp
-.It Cm swap , sw , switch Ar m1 m2
-.Cm unload
-.Ar m1
-and
-.Cm load
-.Ar m2
-.Pp
-.It Cm purge
-.Cm unload
-all modules
-.Pp
-.It Cm refresh
-Reload aliases from current list of modules.
-.Pp
-.It Cm update
-Reload all currently loaded modules.
-.El
-.Ss SEARCH
-.Bl -tag -width Ds -compact
-.It Cm list
-List all loaded modules.
-.Pp
-.It Cm list Ar s1 Op Ar s2 ...
-List all loaded modules that match any of the given patterns.
-.Pp
-.It Cm avail , av Op Ar string
-List all available modules.
-Restricts to modules containing
-.Ar string
-if it is provided.
-.Pp
-.It Cm spider
-List all possible modules.
-.Pp
-.It Cm spider Ar module
-List all possible versions of that
-.Ar module
-file.
-.Pp
-.It Cm spider Ar string
-List all modules that contain
-.Ar string .
-.Pp
-.It Cm spider Ar name/version
-Detailed information about that version of the module.
-.Pp
-.It Cm whatis Ar module
-Print whatis information about the module.
-.Pp
-.It Cm keyword , key Ar string
-Search all name and
-.Cm whatis
-that contain
-.Ar string .
-.El
-.Pp
-All searching commands (
-.Cm spider ,
-.Cm list ,
-.Cm avail ,
-.Cm keyword
-) support regular expressions.
-.Pp
-For example, to find all modules that start with
-.Sq p
-or
-.Sq P :
-.D1 module -r spider '^p'
-.Pp
-Find all modules that have
-.Dq mpi
-in their name:
-.D1 module -r spider mpi
-.Pp
-Find all modules that end with
-.Dq mpi
-in their name:
-.D1 module -r spider 'mpi$'
-.Ss COLLECTIONS
-.Bl -tag -width Ds -compact
-.It Cm save , s
-Save the current list of modules to a user defined
-.Dq default
-collection.
-.Pp
-.It Cm save , s Ar name
-Save the current list of modules to the
-.Ar name
-collection.
-.Pp
-.It Cm reset
-The same as
-.Cm restore
-.Ar system .
-.Pp
-.It Cm restore , r
-Restore modules from the user's
-.Dq default
-(if defined) or the system default.
-.Pp
-.It Cm restore , r Ar name
-Restore modules from
-.Ar name
-collection.
-.Pp
-.It Cm restore Ar system
-Restore module state to system defaults.
-.Pp
-.It Cm savelist
-List of saved collections.
-.Pp
-.It Cm describe , mcc Ar name
-Describe the contents of the
-.Ar name
-module collection.
-.Pp
-.It Cm disable Ar name
-Disable (i.e. remove) the
-.Ar name
-collection.
-.El
-.Ss DEPRECATED
-.Bl -tag -width Ds -compact
-.It Cm getdefault Op Ar name
-Load the
-.Ar name
-collection of modules or users
-.Dq default
-if no
-.Ar name
-given.
-.Pp
-Use
-.Cm restore
-Instead.
-.Pp
-.It Cm setdefault Op Ar name
-Save current list of modules to
-.Ar name
-if given, otherwise save as the
-.Dq default
-list for the user.
-.Pp
-Use
-.Cm save
-instead.
-.El
-.Ss MISC
-.Bl -tag -width Ds -compact
-.It Cm is-loaded Ar modulefile
-Return a true status if
-.Ar module
-is loaded.
-.Pp
-.It Cm is-avail Ar modulefile
-Return a true status if
-.Ar module
-can be loaded.
-.Pp
-.It Cm show Ar modulefile
-Show the commands in the
-.Ar module
-file.
-.Pp
-.It Cm use [-a] Ar path
-Prepend or append
-.Ar path
-to
-.Ev MODULEPATH .
-.Pp
-.It Cm unuse Ar path
-Remove
-.Ar path
-from
-.Ev MODULEPATH .
-.Pp
-.It Cm tablelist
-Output list of active modules as a lua table.
-.El
-.Sh ENVIRONMENT
-To print properties and warnings in color, set the
-.Ev LMOD_COLORIZE
-environment variable to
-.Sy YES
-.Sh SEE ALSO
-.Bd -filled -offset indent
-.TS
-allbox tab(@);
-le lw10.
-Documentation@http://lmod.readthedocs.org
-Github@https://github.com/TACC/Lmod
-Sourceforge@https://lmod.sf.net
-TACC Homepage@https://www.tacc.utexas.edu/research-development/tacc-projects/lmod
-.TE
-.Ed
-.Pp
-To report a bug please read
-.Lk http://lmod.readthedocs.io/en/latest/075_bug_reporting.html
-.Sh AUTHORS
-Modules based on Lua, written by
-.An Robert McLay Aq Mt mclay@tacc.utexas.edu .
-.Pp
-The man page for Gentoo linux is maintained by the
-.An Gentoo Science Project <sci@gentoo.org> .

diff --git a/sys-cluster/lmod/lmod-8.4.20.ebuild b/sys-cluster/lmod/lmod-8.4.20.ebuild
deleted file mode 100644
index 1e4660090..000000000
--- a/sys-cluster/lmod/lmod-8.4.20.ebuild
+++ /dev/null
@@ -1,125 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-LUA_COMPAT=( lua5-{1..3} )
-inherit autotools lua-single
-
-DESCRIPTION="Environment Module System based on Lua"
-HOMEPAGE="https://lmod.readthedocs.io/en/latest"
-
-if [[ ${PV} == 9999 ]]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/TACC/Lmod"
-else
-	SRC_URI="https://github.com/TACC/Lmod/archive/${PV}.tar.gz -> ${P}.tar.gz"
-	S="${WORKDIR}"/Lmod-${PV}
-	KEYWORDS="~amd64 ~x86"
-fi
-
-LICENSE="MIT"
-SLOT="0"
-IUSE="auto-swap cache dotfiles duplicate +extend italic module-cmd nocase redirect test"
-REQUIRED_USE="${LUA_REQUIRED_USE}"
-RESTRICT="!test? ( test )"
-
-RDEPEND="${LUA_DEPS}
-	app-shells/tcsh
-	|| (
-		app-shells/loksh
-		app-shells/mksh
-		app-shells/ksh
-	)
-	app-shells/zsh
-	dev-lang/tcl
-	dev-lang/tk
-	$(lua_gen_cond_dep '
-		>=dev-lua/luafilesystem-1.8.0[${LUA_USEDEP}]
-		dev-lua/luajson[${LUA_USEDEP}]
-		dev-lua/luaposix[${LUA_USEDEP}]
-		dev-lua/lua-term[${LUA_USEDEP}]
-	')
-	virtual/pkgconfig
-"
-DEPEND="${RDEPEND}"
-BDEPEND="${RDEPEND}
-	test? (
-		$(lua_gen_cond_dep '
-			dev-util/hermes[${LUA_SINGLE_USEDEP}]
-		')
-	)
-"
-
-PATCHES=( "${FILESDIR}"/${PN}-8.4.19-no-libsandbox.patch )
-
-pkg_pretend() {
-	elog "You can control the siteName and syshost settings by"
-	elog "using the variables LMOD_SITENAME and LMOD_SYSHOST, during"
-	elog "build time, which are both set to 'Gentoo' by default."
-	elog "There are a lot of options for this package, especially"
-	elog "for run time behaviour. Remember to use the EXTRA_ECONF variable."
-	elog "To see full list of options visit:"
-	elog "\t https://lmod.readthedocs.io/en/latest/090_configuring_lmod.html"
-}
-
-src_prepare() {
-	default
-	rm -rf pkgs/{luafilesystem,term} || die
-	rm -rf rt/{ck_mtree_syntax,colorize,end2end,help,ifur,settarg} || die
-	eautoreconf
-}
-
-src_configure() {
-	local LMOD_SITENAME="${LMOD_SITENAME:-Gentoo}"
-	local LMOD_SYSHOST="${LMOD_SYSHOST:-Gentoo}"
-
-	local LUAC="${LUA%/*}/luac${LUA#*lua}"
-
-	local myconf=(
-		--with-tcl
-		--with-fastTCLInterp
-		--with-colorize
-		--with-supportKsh
-		--without-useBuiltinPkgs
-		--with-siteControlPrefix
-		--with-siteName="${LMOD_SITENAME}"
-		--with-syshost="${LMOD_SYSHOST}"
-		--with-lua_include="$(lua_get_include_dir)"
-		--with-lua="${LUA}"
-		--with-luac="${LUAC}"
-		--with-module-root-path="${EPREFIX}/etc/modulefiles"
-		--with-updateSystemFn="${EPREFIX}/etc/modulefiles/.lmod_system_update"
-		--prefix="${EPREFIX}/usr/share/Lmod"
-		$(use_with duplicate duplicatePaths)
-		$(use_with nocase caseIndependentSorting)
-		$(use_with italic hiddenItalic)
-		$(use_with auto-swap autoSwap)
-		$(use_with module-cmd exportedModuleCmd)
-		$(use_with redirect)
-		$(use_with dotfiles useDotFiles)
-		$(use_with cache cachedLoads)
-		$(use_with extend extendedDefault)
-	)
-	econf "${myconf[@]}"
-}
-
-src_compile() {
-	CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" \
-	default
-}
-
-src_test() {
-	local -x PATH="/opt/hermes/bin:${PATH}"
-	tm -vvv || die
-	testcleanup || die
-}
-
-src_install() {
-	default
-	newman "${FILESDIR}"/module.1-8.4.20 module.1
-	insinto /etc/profile.d
-	newins "${ED}"/usr/share/Lmod/init/profile lmod.sh
-	newins "${ED}"/usr/share/Lmod/init/profile.fish lmod.fish
-	keepdir /etc/modulefiles
-}

diff --git a/sys-cluster/lmod/lmod-9999.ebuild b/sys-cluster/lmod/lmod-9999.ebuild
deleted file mode 100644
index 1e4660090..000000000
--- a/sys-cluster/lmod/lmod-9999.ebuild
+++ /dev/null
@@ -1,125 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-LUA_COMPAT=( lua5-{1..3} )
-inherit autotools lua-single
-
-DESCRIPTION="Environment Module System based on Lua"
-HOMEPAGE="https://lmod.readthedocs.io/en/latest"
-
-if [[ ${PV} == 9999 ]]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/TACC/Lmod"
-else
-	SRC_URI="https://github.com/TACC/Lmod/archive/${PV}.tar.gz -> ${P}.tar.gz"
-	S="${WORKDIR}"/Lmod-${PV}
-	KEYWORDS="~amd64 ~x86"
-fi
-
-LICENSE="MIT"
-SLOT="0"
-IUSE="auto-swap cache dotfiles duplicate +extend italic module-cmd nocase redirect test"
-REQUIRED_USE="${LUA_REQUIRED_USE}"
-RESTRICT="!test? ( test )"
-
-RDEPEND="${LUA_DEPS}
-	app-shells/tcsh
-	|| (
-		app-shells/loksh
-		app-shells/mksh
-		app-shells/ksh
-	)
-	app-shells/zsh
-	dev-lang/tcl
-	dev-lang/tk
-	$(lua_gen_cond_dep '
-		>=dev-lua/luafilesystem-1.8.0[${LUA_USEDEP}]
-		dev-lua/luajson[${LUA_USEDEP}]
-		dev-lua/luaposix[${LUA_USEDEP}]
-		dev-lua/lua-term[${LUA_USEDEP}]
-	')
-	virtual/pkgconfig
-"
-DEPEND="${RDEPEND}"
-BDEPEND="${RDEPEND}
-	test? (
-		$(lua_gen_cond_dep '
-			dev-util/hermes[${LUA_SINGLE_USEDEP}]
-		')
-	)
-"
-
-PATCHES=( "${FILESDIR}"/${PN}-8.4.19-no-libsandbox.patch )
-
-pkg_pretend() {
-	elog "You can control the siteName and syshost settings by"
-	elog "using the variables LMOD_SITENAME and LMOD_SYSHOST, during"
-	elog "build time, which are both set to 'Gentoo' by default."
-	elog "There are a lot of options for this package, especially"
-	elog "for run time behaviour. Remember to use the EXTRA_ECONF variable."
-	elog "To see full list of options visit:"
-	elog "\t https://lmod.readthedocs.io/en/latest/090_configuring_lmod.html"
-}
-
-src_prepare() {
-	default
-	rm -rf pkgs/{luafilesystem,term} || die
-	rm -rf rt/{ck_mtree_syntax,colorize,end2end,help,ifur,settarg} || die
-	eautoreconf
-}
-
-src_configure() {
-	local LMOD_SITENAME="${LMOD_SITENAME:-Gentoo}"
-	local LMOD_SYSHOST="${LMOD_SYSHOST:-Gentoo}"
-
-	local LUAC="${LUA%/*}/luac${LUA#*lua}"
-
-	local myconf=(
-		--with-tcl
-		--with-fastTCLInterp
-		--with-colorize
-		--with-supportKsh
-		--without-useBuiltinPkgs
-		--with-siteControlPrefix
-		--with-siteName="${LMOD_SITENAME}"
-		--with-syshost="${LMOD_SYSHOST}"
-		--with-lua_include="$(lua_get_include_dir)"
-		--with-lua="${LUA}"
-		--with-luac="${LUAC}"
-		--with-module-root-path="${EPREFIX}/etc/modulefiles"
-		--with-updateSystemFn="${EPREFIX}/etc/modulefiles/.lmod_system_update"
-		--prefix="${EPREFIX}/usr/share/Lmod"
-		$(use_with duplicate duplicatePaths)
-		$(use_with nocase caseIndependentSorting)
-		$(use_with italic hiddenItalic)
-		$(use_with auto-swap autoSwap)
-		$(use_with module-cmd exportedModuleCmd)
-		$(use_with redirect)
-		$(use_with dotfiles useDotFiles)
-		$(use_with cache cachedLoads)
-		$(use_with extend extendedDefault)
-	)
-	econf "${myconf[@]}"
-}
-
-src_compile() {
-	CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" \
-	default
-}
-
-src_test() {
-	local -x PATH="/opt/hermes/bin:${PATH}"
-	tm -vvv || die
-	testcleanup || die
-}
-
-src_install() {
-	default
-	newman "${FILESDIR}"/module.1-8.4.20 module.1
-	insinto /etc/profile.d
-	newins "${ED}"/usr/share/Lmod/init/profile lmod.sh
-	newins "${ED}"/usr/share/Lmod/init/profile.fish lmod.fish
-	keepdir /etc/modulefiles
-}

diff --git a/sys-cluster/lmod/metadata.xml b/sys-cluster/lmod/metadata.xml
deleted file mode 100644
index 80a3693f7..000000000
--- a/sys-cluster/lmod/metadata.xml
+++ /dev/null
@@ -1,31 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>gentoo@aisha.cc</email>
-		<name>Aisha Tammy</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci@gentoo.org</email>
-		<name>Gentoo Science Project</name>
-	</maintainer>
-	<longdescription>
-		Lmod is a lua based program to manage the user environment
-		under Unix systems, specifically designed to easily handle the MODULEPATH
-		Hierarchical problem.  Environment Modules provide a convenient way to
-		dynamically change the users' environment through modulefiles.  This
-		includes easily adding or removing directories to the PATH,
-		LD_LIBRARY_PATH and other environment variables.
-	</longdescription>
-	<use>
-		<flag name="auto-swap">enable auto swapping of compiler</flag>
-		<flag name="cache">enable caching of modules</flag>
-		<flag name="dotfiles">use ~/.lmod.d/.cache instead of ~/.lmod.d/__cache__</flag>
-		<flag name="duplicate">allow duplicate entries in path</flag>
-		<flag name="extend">enable extended default functionality</flag>
-		<flag name="italic">use italics, instead of faint colors, to represent hidden folders</flag>
-		<flag name="module-cmd">export module command</flag>
-		<flag name="nocase">do case insensitive sortings and searches</flag>
-		<flag name="redirect">redirect messages to stdout</flag>
-	</use>
-</pkgmetadata>