[gentoo-commits] proj/sci:master commit in: sci-biology/last/

[gentoo-commits] proj/sci:master commit in: sci-biology/last/

[Horea Christian]

commit:     6c8fb90998dcb9570df323291eae7eebb1086d37
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Feb  1 03:10:57 2021 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Feb  1 03:10:57 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6c8fb909

sci-biology/last: EAPI and PYTHON_COMPAT bump

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/last/last-852.ebuild | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-biology/last/last-852.ebuild b/sci-biology/last/last-852.ebuild
index b063550b3..ed21ba097 100644
--- a/sci-biology/last/last-852.ebuild
+++ b/sci-biology/last/last-852.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_7} )
 
 inherit toolchain-funcs python-single-r1
 

[gentoo-commits] proj/sci:master commit in: sci-biology/last/

[Andrew Ammerlaan]

commit:     e003394d2d9de270a177638c633b7222ecaa0d99
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Feb 13 11:06:20 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Feb 13 11:06:20 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e003394d

sci-biology/last: version bump, bump py targets

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/last/{last-852.ebuild => last-1179.ebuild} | 7 +------
 1 file changed, 1 insertion(+), 6 deletions(-)

diff --git a/sci-biology/last/last-852.ebuild b/sci-biology/last/last-1179.ebuild
similarity index 83%
rename from sci-biology/last/last-852.ebuild
rename to sci-biology/last/last-1179.ebuild
index ed21ba097..6972a0312 100644
--- a/sci-biology/last/last-852.ebuild
+++ b/sci-biology/last/last-1179.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_7} )
+PYTHON_COMPAT=( python3_{7,8,9} )
 
 inherit toolchain-funcs python-single-r1
 
@@ -20,11 +20,6 @@ REQUIRED_USE="${PYTHON_REQUIRED_USE}"
 RDEPEND="${PYTHON_DEPS}"
 DEPEND="app-arch/unzip"
 
-PATCHES=(
-	"${FILESDIR}"/${PN}-${PV}-fix-build-system.patch
-	"${FILESDIR}"/${PN}-${PV}-portable-shebangs.patch
-)
-
 src_configure() {
 	tc-export CC CXX
 }

[gentoo-commits] proj/sci:master commit in: sci-biology/last/

[Andrew Ammerlaan]

commit:     1f27fbb695ecf56869c100059e5455be5c5cd972
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May  2 12:08:43 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May  2 12:15:12 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1f27fbb6

sci-biology/last: treeclean

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/last/last-1179.ebuild | 37 -------------------------------------
 sci-biology/last/metadata.xml     |  8 --------
 2 files changed, 45 deletions(-)

diff --git a/sci-biology/last/last-1179.ebuild b/sci-biology/last/last-1179.ebuild
deleted file mode 100644
index 6972a0312..000000000
--- a/sci-biology/last/last-1179.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-
-inherit toolchain-funcs python-single-r1
-
-DESCRIPTION="Genome-scale comparison of biological sequences"
-HOMEPAGE="http://last.cbrc.jp/"
-SRC_URI="http://last.cbrc.jp/${P}.zip"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}"
-DEPEND="app-arch/unzip"
-
-src_configure() {
-	tc-export CC CXX
-}
-
-src_install() {
-	local DOCS=( doc/*.txt ChangeLog.txt README.txt )
-	local HTML_DOCS=( doc/*html )
-	einstalldocs
-
-	dobin src/lastdb src/lastal src/last-split src/last-merge-batches \
-		src/last-pair-probs src/lastdb8 src/lastal8 src/last-split8
-
-	cd scripts || die
-	dobin *
-}

diff --git a/sci-biology/last/metadata.xml b/sci-biology/last/metadata.xml
deleted file mode 100644
index 8417d1580..000000000
--- a/sci-biology/last/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>