[gentoo-commits] proj/sci:master commit in: sci-biology/zmap/

[gentoo-commits] proj/sci:master commit in: sci-biology/zmap/

[Andrew Ammerlaan]

commit:     e43706e7519c4da5fadaae72c319788351be1743
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Feb  5 11:26:31 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Feb  5 11:26:31 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e43706e7

sci-biology/zmap: use https for homepage

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/zmap/zmap-2.12.0.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/zmap/zmap-2.12.0.ebuild b/sci-biology/zmap/zmap-2.12.0.ebuild
index 4b52b3ebf..b4cb2e9b4 100644
--- a/sci-biology/zmap/zmap-2.12.0.ebuild
+++ b/sci-biology/zmap/zmap-2.12.0.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
 DESCRIPTION="A desktop genome browser using GFF inputs"
-HOMEPAGE="http://www.sanger.ac.uk/science/tools/zmap"
+HOMEPAGE="https://www.sanger.ac.uk/science/tools/zmap"
 SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/zmap/production/zmap-${PV}.tar.gz
 	ftp://ftp.sanger.ac.uk/pub/resources/software/zmap/ZMap_User_Manual.pdf"
 

[gentoo-commits] proj/sci:master commit in: sci-biology/zmap/

[Martin Mokrejs]

commit:     19f8f2011b7c3b5ec0b470849b753fed4a28ff42
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Dec 14 10:42:18 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Dec 14 10:42:18 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=19f8f201

sci-biology/zmap: add einfo mentioning seqtools package

Package-Manager: Portage-2.3.52, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>

 sci-biology/zmap/zmap-2.12.0.ebuild | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/sci-biology/zmap/zmap-2.12.0.ebuild b/sci-biology/zmap/zmap-2.12.0.ebuild
index 898358d49..4b52b3ebf 100644
--- a/sci-biology/zmap/zmap-2.12.0.ebuild
+++ b/sci-biology/zmap/zmap-2.12.0.ebuild
@@ -23,3 +23,7 @@ DEPEND="
 	dev-libs/openssl:0="
 RDEPEND="${DEPEND}
 	sci-biology/seqtools"
+
+pkg_postinst(){
+	einfo "Optionally also install sci-biology/seqtools"
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/zmap/

[David Seifert]

commit:     1a069d5e5eb7d98e17f3223793ecacb8f9e02226
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Dec 13 22:36:29 2018 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Dec 13 22:36:29 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1a069d5e

sci-biology/zmap: Bump to EAPI 7

Package-Manager: Portage-2.3.52, Repoman-2.3.12
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/zmap/zmap-2.12.0.ebuild | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-biology/zmap/zmap-2.12.0.ebuild b/sci-biology/zmap/zmap-2.12.0.ebuild
index b89157515..898358d49 100644
--- a/sci-biology/zmap/zmap-2.12.0.ebuild
+++ b/sci-biology/zmap/zmap-2.12.0.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
 DESCRIPTION="A desktop genome browser using GFF inputs"
 HOMEPAGE="http://www.sanger.ac.uk/science/tools/zmap"
@@ -20,6 +20,6 @@ DEPEND="
 	curl? ( net-misc/curl )
 	dev-db/sqlite:3
 	virtual/mysql
-	dev-libs/openssl:="
+	dev-libs/openssl:0="
 RDEPEND="${DEPEND}
 	sci-biology/seqtools"

[gentoo-commits] proj/sci:master commit in: sci-biology/zmap/

[Martin Mokrejs]

commit:     1c4748ccdbca98c10507fb41131bc925abdd1e99
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Apr 21 11:22:34 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Apr 21 11:22:34 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1c4748cc

sci-biology/zmap: new package

Package-Manager: Portage-2.3.28, Repoman-2.3.9

 sci-biology/zmap/metadata.xml       | 12 ++++++++++++
 sci-biology/zmap/zmap-2.12.0.ebuild | 25 +++++++++++++++++++++++++
 2 files changed, 37 insertions(+)

diff --git a/sci-biology/zmap/metadata.xml b/sci-biology/zmap/metadata.xml
new file mode 100644
index 000000000..138cb7705
--- /dev/null
+++ b/sci-biology/zmap/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+</pkgmetadata>

diff --git a/sci-biology/zmap/zmap-2.12.0.ebuild b/sci-biology/zmap/zmap-2.12.0.ebuild
new file mode 100644
index 000000000..b89157515
--- /dev/null
+++ b/sci-biology/zmap/zmap-2.12.0.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="A desktop genome browser using GFF inputs"
+HOMEPAGE="http://www.sanger.ac.uk/science/tools/zmap"
+SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/zmap/production/zmap-${PV}.tar.gz
+	ftp://ftp.sanger.ac.uk/pub/resources/software/zmap/ZMap_User_Manual.pdf"
+
+LICENSE="GPL-2" # website states Apache-2.0, bundled COPYING says GPL-2
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="curl"
+
+DEPEND="
+	sys-libs/readline:=
+	dev-libs/glib
+	x11-libs/gtk+:=
+	curl? ( net-misc/curl )
+	dev-db/sqlite:3
+	virtual/mysql
+	dev-libs/openssl:="
+RDEPEND="${DEPEND}
+	sci-biology/seqtools"