From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 0BE95138239 for ; Mon, 1 Feb 2021 07:41:32 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 21E70E0829; Mon, 1 Feb 2021 07:41:31 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 0A5D2E0829 for ; Mon, 1 Feb 2021 07:41:31 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id C5069335DA3 for ; Mon, 1 Feb 2021 07:41:29 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 4C430B9 for ; Mon, 1 Feb 2021 07:41:28 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1612165274.295c07c0f1dc210afcb0131f0451f86b3c83b1b3.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/MaSuRCA/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild X-VCS-Directories: sci-biology/MaSuRCA/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 295c07c0f1dc210afcb0131f0451f86b3c83b1b3 X-VCS-Branch: master Date: Mon, 1 Feb 2021 07:41:28 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: dc6e4860-2de7-43c3-b4a4-34200278fca2 X-Archives-Hash: d71c26e0d7079164b6f5f03bbbb4a3ab commit: 295c07c0f1dc210afcb0131f0451f86b3c83b1b3 Author: Andrew Ammerlaan riseup net> AuthorDate: Mon Feb 1 07:41:14 2021 +0000 Commit: Andrew Ammerlaan riseup net> CommitDate: Mon Feb 1 07:41:14 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=295c07c0 sci-biology/MaSuRCA: version bump 4.0.1 Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> .../{MaSuRCA-3.2.2.ebuild => MaSuRCA-4.0.1.ebuild} | 26 ++++++++-------------- 1 file changed, 9 insertions(+), 17 deletions(-) diff --git a/sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild similarity index 52% rename from sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild rename to sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild index 2f2f9ddbd..8e6d2925e 100644 --- a/sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild +++ b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild @@ -1,35 +1,27 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 DESCRIPTION="de Bruijn and OLC assembler for Sanger, Roche 454, Illumina, Pacbio, Nanopore" HOMEPAGE="http://www.genome.umd.edu/masurca.html http://bioinformatics.oxfordjournals.org/content/29/21/2669 - http://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf" -SRC_URI="${P}.tar.gz - ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA_QuickStartGuide.pdf" + https://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf" +SRC_URI="https://github.com/alekseyzimin/masurca/releases/download/v${PV}/${P}.tar.gz" LICENSE="BSD GPL-2 GPL-3" SLOT="0" -KEYWORDS="" -IUSE="" +KEYWORDS="~amd64" -DEPEND=">=dev-lang/perl-5.8 - app-arch/bzip2" +DEPEND=" + >=dev-lang/perl-5.8 + app-arch/bzip2 +" RDEPEND="${DEPEND}" -RESTRICT="fetch" - -src_configure(){ - ./install.sh || die -} - src_compile(){ ./install.sh || die } - src_install(){ dobin masurca - dodoc sr_config_example.txt }