From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 6B6771382C5 for ; Sun, 24 Jan 2021 14:29:41 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 619B9E0887; Sun, 24 Jan 2021 14:29:40 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 42AF5E0887 for ; Sun, 24 Jan 2021 14:29:40 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 0BC85341178 for ; Sun, 24 Jan 2021 14:29:39 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 5BAA3328 for ; Sun, 24 Jan 2021 14:29:37 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1611498573.e4d160b889b5217e7eff07576ce4df910ff2200a.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/flexbar/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/flexbar/flexbar-2.7.0.ebuild sci-biology/flexbar/flexbar-3.0.0.ebuild sci-biology/flexbar/flexbar-3.5.0.ebuild X-VCS-Directories: sci-biology/flexbar/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: e4d160b889b5217e7eff07576ce4df910ff2200a X-VCS-Branch: master Date: Sun, 24 Jan 2021 14:29:37 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 91720ae3-5b98-4999-a52f-3041b3ca9e15 X-Archives-Hash: a3e6a5f6b908e395fa4c7c6878a22346 commit: e4d160b889b5217e7eff07576ce4df910ff2200a Author: Andrew Ammerlaan riseup net> AuthorDate: Sun Jan 24 14:29:33 2021 +0000 Commit: Andrew Ammerlaan riseup net> CommitDate: Sun Jan 24 14:29:33 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e4d160b8 sci-biology/flexbar: version bump, cmake-utils --> cmake Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/flexbar/flexbar-2.7.0.ebuild | 33 ---------------------- .../{flexbar-3.0.0.ebuild => flexbar-3.5.0.ebuild} | 10 +++---- 2 files changed, 4 insertions(+), 39 deletions(-) diff --git a/sci-biology/flexbar/flexbar-2.7.0.ebuild b/sci-biology/flexbar/flexbar-2.7.0.ebuild deleted file mode 100644 index 9fc465c10..000000000 --- a/sci-biology/flexbar/flexbar-2.7.0.ebuild +++ /dev/null @@ -1,33 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils - -DESCRIPTION="Barcode, MID tag and adapter sequence removal" -HOMEPAGE="https://github.com/seqan/flexbar" -SRC_URI="https://github.com/seqan/flexbar/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -CDEPEND=" - dev-cpp/tbb - >=sci-biology/seqan-2.1.1:0" -DEPEND="${CDEPEND}" -RDEPEND="${CDEPEND}" - -# TODO: need to call 'pkg-config --cflags seqan-2.2' and pass it down -src_configure() { - local CPPFLAGS=${CPPFLAGS} - append-cppflags `pkg-config --cflags seqan-2.2` - local CXXFLAGS="${CXXFLAGS}" - append-cxxflags "-std=c++14" - cmake-utils_src_configure -} - -# SeqAn requires C++14! You must compile your application with -std=c++14, -std=gnu++14 or -std=c++1y -# https://github.com/seqan/flexbar/issues/8 diff --git a/sci-biology/flexbar/flexbar-3.0.0.ebuild b/sci-biology/flexbar/flexbar-3.5.0.ebuild similarity index 88% rename from sci-biology/flexbar/flexbar-3.0.0.ebuild rename to sci-biology/flexbar/flexbar-3.5.0.ebuild index 65f5dd077..b390f5056 100644 --- a/sci-biology/flexbar/flexbar-3.0.0.ebuild +++ b/sci-biology/flexbar/flexbar-3.5.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -inherit cmake-utils +inherit cmake DESCRIPTION="Barcode, MID tag and adapter sequence removal" HOMEPAGE="https://github.com/seqan/flexbar" @@ -12,7 +12,6 @@ SRC_URI="https://github.com/seqan/flexbar/archive/v${PV}.tar.gz -> ${P}.tar.gz" LICENSE="GPL-3" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" CDEPEND=" dev-cpp/tbb @@ -28,14 +27,13 @@ src_configure() { append-cppflags `pkg-config --cflags seqan-2.2` local CXXFLAGS="${CXXFLAGS}" append-cxxflags "-std=c++14" - cmake-utils_src_configure + cmake_src_configure } # SeqAn requires C++14! You must compile your application with -std=c++14, -std=gnu++14 or -std=c++1y # https://github.com/seqan/flexbar/issues/8 src_install(){ - elog `pwd` dobin ../"${P}"_build/flexbar dodoc ../"${P}"/README.md }