* [gentoo-commits] proj/sci:master commit in: sci-biology/bam-readcount/
@ 2017-04-14 17:17 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2017-04-14 17:17 UTC (permalink / raw
To: gentoo-commits
commit: 4f3cb1a1598818ffe5e92cec47aea451216cf22b
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Apr 14 17:16:41 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Apr 14 17:16:41 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4f3cb1a1
sci-biology/bam-readcount: new package
Is needed by VarScan.
Package-Manager: Portage-2.3.5, Repoman-2.3.2
sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild | 18 ++++++++++++++++++
sci-biology/bam-readcount/bam-readcount-9999.ebuild | 18 ++++++++++++++++++
sci-biology/bam-readcount/metadata.xml | 12 ++++++++++++
3 files changed, 48 insertions(+)
diff --git a/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild b/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild
new file mode 100644
index 000000000..dbc344fd9
--- /dev/null
+++ b/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild
@@ -0,0 +1,18 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit cmake-utils
+
+DESCRIPTION="Count DNA sequence reads in BAM files and other statistics calculations"
+HOMEPAGE="https://github.com/genome/bam-readcount"
+SRC_URI="https://github.com/genome/bam-readcount/archive/v0.8.0.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/bam-readcount/bam-readcount-9999.ebuild b/sci-biology/bam-readcount/bam-readcount-9999.ebuild
new file mode 100644
index 000000000..a9b8c4f0b
--- /dev/null
+++ b/sci-biology/bam-readcount/bam-readcount-9999.ebuild
@@ -0,0 +1,18 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit git-r3 cmake-utils
+
+DESCRIPTION="Count DNA sequence reads in BAM files and other statistics calculations"
+HOMEPAGE="https://github.com/genome/bam-readcount"
+EGIT_REPO_URI="https://github.com/genome/bam-readcount.git"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/bam-readcount/metadata.xml b/sci-biology/bam-readcount/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-biology/bam-readcount/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/bam-readcount/
@ 2018-02-03 13:49 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2018-02-03 13:49 UTC (permalink / raw
To: gentoo-commits
commit: ecc98962e40dc2daf1a8afb2cf22826f7d3efe32
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 3 13:49:38 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 3 13:49:38 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ecc98962
sci-biology/bam-readcount: use ${PV}
Package-Manager: Portage-2.3.23, Repoman-2.3.6
sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild b/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild
index dbc344fd9..9c242afc1 100644
--- a/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild
+++ b/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -7,7 +7,7 @@ inherit cmake-utils
DESCRIPTION="Count DNA sequence reads in BAM files and other statistics calculations"
HOMEPAGE="https://github.com/genome/bam-readcount"
-SRC_URI="https://github.com/genome/bam-readcount/archive/v0.8.0.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/genome/bam-readcount/archive/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/bam-readcount/
@ 2021-01-24 14:01 Andrew Ammerlaan
0 siblings, 0 replies; 3+ messages in thread
From: Andrew Ammerlaan @ 2021-01-24 14:01 UTC (permalink / raw
To: gentoo-commits
commit: e4927a5cac4ea2a64612f5de6fab52dbb1857766
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sun Jan 24 14:01:42 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sun Jan 24 14:01:42 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e4927a5c
sci-biology/bam-readcount: cmake-utils --> cmake, EAPI bump
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild | 10 +++-------
sci-biology/bam-readcount/bam-readcount-9999.ebuild | 10 +++-------
2 files changed, 6 insertions(+), 14 deletions(-)
diff --git a/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild b/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild
index 9c242afc1..1cdc8a5a3 100644
--- a/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild
+++ b/sci-biology/bam-readcount/bam-readcount-0.8.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-inherit cmake-utils
+inherit cmake
DESCRIPTION="Count DNA sequence reads in BAM files and other statistics calculations"
HOMEPAGE="https://github.com/genome/bam-readcount"
@@ -12,7 +12,3 @@ SRC_URI="https://github.com/genome/bam-readcount/archive/v${PV}.tar.gz -> ${P}.t
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}"
diff --git a/sci-biology/bam-readcount/bam-readcount-9999.ebuild b/sci-biology/bam-readcount/bam-readcount-9999.ebuild
index a9b8c4f0b..7dceb06e6 100644
--- a/sci-biology/bam-readcount/bam-readcount-9999.ebuild
+++ b/sci-biology/bam-readcount/bam-readcount-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-inherit git-r3 cmake-utils
+inherit git-r3 cmake
DESCRIPTION="Count DNA sequence reads in BAM files and other statistics calculations"
HOMEPAGE="https://github.com/genome/bam-readcount"
@@ -12,7 +12,3 @@ EGIT_REPO_URI="https://github.com/genome/bam-readcount.git"
LICENSE="MIT"
SLOT="0"
KEYWORDS=""
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}"
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