[gentoo-commits] proj/sci:master commit in: sci-libs/nipype/

["Andrew Ammerlaan" <andrewammerlaan@riseup.net>]

commit:     2497d3d59d9e67dcc67eb8687964e57d18b6993c
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Jan 20 09:40:39 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Jan 20 09:40:39 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=2497d3d5

sci-libs/nipype: drop old failed REQUIRED_USE: py_targets_py3_7

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-libs/nipype/nipype-1.1.1-r2.ebuild | 70 ----------------------------------
 sci-libs/nipype/nipype-1.4.2.ebuild    | 67 --------------------------------
 2 files changed, 137 deletions(-)

diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild
deleted file mode 100644
index 734fae8fc..000000000
--- a/sci-libs/nipype/nipype-1.1.1-r2.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_7 )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
-	dev-python/future[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/prov[${PYTHON_USEDEP}]
-	dev-python/setuptools[${PYTHON_USEDEP}]
-	sci-libs/nibabel[${PYTHON_USEDEP}]
-	test? (
-		dev-python/mock[${PYTHON_USEDEP}]
-		dev-python/pytest[${PYTHON_USEDEP}]
-		${RDEPEND}
-		)
-"
-# Dependency disabled as upstream test configuration which requires it fails
-#dev-python/pytest-xdist[${PYTHON_USEDEP}]
-
-RDEPEND="
-	>=dev-python/click-6.6[${PYTHON_USEDEP}]
-	dev-python/networkx[${PYTHON_USEDEP}]
-	dev-python/packaging[${PYTHON_USEDEP}]
-	dev-python/pydot[${PYTHON_USEDEP}]
-	dev-python/pydotplus[${PYTHON_USEDEP}]
-	dev-python/pygraphviz[${PYTHON_USEDEP}]
-	dev-python/python-dateutil[${PYTHON_USEDEP}]
-	dev-python/simplejson[${PYTHON_USEDEP}]
-	dev-python/traits[${PYTHON_USEDEP}]
-	dev-python/scipy[${PYTHON_USEDEP}]
-"
-
-src_prepare() {
-	sed -i\
-		-e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\
-		-e "/'pytest-xdist',$/d"\
-		-e "/'prov==%s' % PROV_VERSION,/d"\
-		nipype/info.py || die
-	sed -i\
-		-e "s/prov==1\.5\.0/prov/g"\
-		requirements.txt rtd_requirements.txt || die
-	default
-}
-
-python_test() {
-	pytest -vv\
-		|| die
-	# Upstream test configuration fails
-		#-c nipype/pytest.ini\
-		#--doctest-modules nipype\
-		#--cov nipype\
-		#--cov-config .coveragerc\
-		#--cov-report xml:cov.xml\
-}

diff --git a/sci-libs/nipype/nipype-1.4.2.ebuild b/sci-libs/nipype/nipype-1.4.2.ebuild
deleted file mode 100644
index 1f91463b6..000000000
--- a/sci-libs/nipype/nipype-1.4.2.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_7 )
-PYTHON_REQ_USE="threads(+),sqlite"
-
-inherit distutils-r1
-
-DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
-HOMEPAGE="http://nipy.sourceforge.net/nipype/"
-SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/prov[${PYTHON_USEDEP}]
-	sci-libs/nibabel[${PYTHON_USEDEP}]
-	test? (
-		dev-python/mock[${PYTHON_USEDEP}]
-		dev-python/pytest[${PYTHON_USEDEP}]
-		${RDEPEND}
-		)
-"
-# Dependency disabled as upstream test configuration which requires it fails
-#dev-python/pytest-xdist[${PYTHON_USEDEP}]
-
-RDEPEND="
-	>=dev-python/click-6.6[${PYTHON_USEDEP}]
-	dev-python/filelock[${PYTHON_USEDEP}]
-	dev-python/networkx[${PYTHON_USEDEP}]
-	dev-python/packaging[${PYTHON_USEDEP}]
-	dev-python/pydot[${PYTHON_USEDEP}]
-	dev-python/pydotplus[${PYTHON_USEDEP}]
-	dev-python/python-dateutil[${PYTHON_USEDEP}]
-	dev-python/scipy[${PYTHON_USEDEP}]
-	dev-python/simplejson[${PYTHON_USEDEP}]
-	dev-python/traits[${PYTHON_USEDEP}]
-"
-#etelemetry and neurdflib
-
-src_prepare() {
-	sed -i \
-		-e "/def test_no_et(tmp_path):/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-606003186')" \
-		nipype/tests/test_nipype.py || die
-	sed -i \
-		-e "/def test_fslversion():/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-605997462')" \
-		nipype/interfaces/fsl/tests/test_base.py || die
-	default
-}
-
-python_test() {
-	NIPYPE_NO_ET=1 pytest -vv\
-		|| die
-	# Upstream test configuration fails
-		#-c nipype/pytest.ini\
-		#--doctest-modules nipype\
-		#--cov nipype\
-		#--cov-config .coveragerc\
-		#--cov-report xml:cov.xml\
-}