[gentoo-commits] proj/sci:master commit in: sci-biology/tagdust/

[gentoo-commits] proj/sci:master commit in: sci-biology/tagdust/

[Andrew Ammerlaan]

commit:     153b7aa8fd8b7949289c85e4a0300a65fc1ffd2e
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 16:36:07 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 16:36:07 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=153b7aa8

sci-biology/tagdust: properly name tarball

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/tagdust/tagdust-20101028.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/tagdust/tagdust-20101028.ebuild b/sci-biology/tagdust/tagdust-20101028.ebuild
index 61a2c3838..1357a0da5 100644
--- a/sci-biology/tagdust/tagdust-20101028.ebuild
+++ b/sci-biology/tagdust/tagdust-20101028.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
 
 DESCRIPTION="Trim multimers of various primers/adapter from Illumina datasets"
 HOMEPAGE="http://genome.gsc.riken.jp/osc/english/dataresource"
-SRC_URI="http://genome.gsc.riken.jp/osc/english/software/src/tagdust.tgz"
+SRC_URI="http://genome.gsc.riken.jp/osc/english/software/src/tagdust.tgz -> ${P}.tgz"
 
 LICENSE="GPL-3"
 SLOT="0"

[gentoo-commits] proj/sci:master commit in: sci-biology/tagdust/

[Martin Mokrejs]

commit:     f7197b7ce3f627083bdac70048b0711968472b49
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Feb  2 20:51:29 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Feb  2 20:51:29 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f7197b7c

sci-biology/tagdust: new package

Package-Manager: portage-2.2.15

---
 sci-biology/tagdust/ChangeLog               |  9 ++++++++
 sci-biology/tagdust/metadata.xml            |  9 ++++++++
 sci-biology/tagdust/tagdust-20101028.ebuild | 33 +++++++++++++++++++++++++++++
 3 files changed, 51 insertions(+)

diff --git a/sci-biology/tagdust/ChangeLog b/sci-biology/tagdust/ChangeLog
new file mode 100644
index 0000000..8d2d813
--- /dev/null
+++ b/sci-biology/tagdust/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/tagdust
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*tagdust-20101028 (02 Feb 2015)
+
+  02 Feb 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+  +tagdust-20101028.ebuild:
+  sci-biology/tagdust: new package

diff --git a/sci-biology/tagdust/metadata.xml b/sci-biology/tagdust/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/tagdust/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/tagdust/tagdust-20101028.ebuild b/sci-biology/tagdust/tagdust-20101028.ebuild
new file mode 100644
index 0000000..b9e0862
--- /dev/null
+++ b/sci-biology/tagdust/tagdust-20101028.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Trim multimers of various primers/adapter from Illumina datasets"
+HOMEPAGE="http://genome.gsc.riken.jp/osc/english/dataresource"
+SRC_URI="http://genome.gsc.riken.jp/osc/english/software/src/tagdust.tgz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/tagdust
+
+src_prepare(){
+	sed -e "s/^CFLAGS/#CFLAGS/" -e "s#/usr/local/bin#\$(DESTDIR)/usr/bin#" \
+		-e "s#/usr/share/man/#\$(DESTDIR)/usr/share/man/#" -i Makefile
+}
+
+src_install(){
+	doman tagdust.1
+	dobin tagdust
+	insinto /usr/share/tagdust/Illumina
+	doins "test/"solexa*.fa
+	insinto /usr/share/tagdust
+	doins "test/"protocol.txt README
+}