[gentoo-commits] proj/sci:master commit in: sci-biology/coral/

[gentoo-commits] proj/sci:master commit in: sci-biology/coral/

[Martin Mokrejs]

commit:     b2f972c7dadc664fb99a45ba6740fd3efb418be9
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Mar 17 13:21:13 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Mar 17 13:21:13 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b2f972c7

new package

Package-Manager: portage-2.2.15

 sci-biology/coral/ChangeLog        |  9 +++++++++
 sci-biology/coral/coral-1.4.ebuild | 28 ++++++++++++++++++++++++++++
 sci-biology/coral/metadata.xml     |  9 +++++++++
 3 files changed, 46 insertions(+)

diff --git a/sci-biology/coral/ChangeLog b/sci-biology/coral/ChangeLog
new file mode 100644
index 0000000..06fd2f3
--- /dev/null
+++ b/sci-biology/coral/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/coral
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*coral-1.4 (17 Mar 2015)
+
+  17 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +coral-1.4.ebuild,
+  +metadata.xml:
+  new package

diff --git a/sci-biology/coral/coral-1.4.ebuild b/sci-biology/coral/coral-1.4.ebuild
new file mode 100644
index 0000000..f716146
--- /dev/null
+++ b/sci-biology/coral/coral-1.4.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils
+
+DESCRIPTION="Error corrector for Illumina and Roche/454 reads using multiple alignment info"
+HOMEPAGE="http://www.cs.helsinki.fi/u/lmsalmel/coral"
+SRC_URI="http://www.cs.helsinki.fi/u/lmsalmel/coral/coral-1.4.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_prepare(){
+	sed -e "s#-O3 -Wall -g#${CXXFLAGS}#; s#g++#$(tc-getCXX)#" -i Makefile || die
+}
+
+src_install(){
+	dobin coral
+	dodoc README
+}

diff --git a/sci-biology/coral/metadata.xml b/sci-biology/coral/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/coral/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/coral/

[Andrew Ammerlaan]

commit:     c4f68794cf9097f158a7e643aa2a5a64a6ef40a2
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 16:17:57 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 16:17:57 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=c4f68794

sci-biology/coral: use P in SRC_URI

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/coral/coral-1.4.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/coral/coral-1.4.ebuild b/sci-biology/coral/coral-1.4.ebuild
index bbddff358..beb33f987 100644
--- a/sci-biology/coral/coral-1.4.ebuild
+++ b/sci-biology/coral/coral-1.4.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -7,7 +7,7 @@ inherit eutils
 
 DESCRIPTION="Error corrector for Illumina and Roche/454 reads using multiple alignment info"
 HOMEPAGE="http://www.cs.helsinki.fi/u/lmsalmel/coral"
-SRC_URI="http://www.cs.helsinki.fi/u/lmsalmel/coral/coral-1.4.tar.gz"
+SRC_URI="http://www.cs.helsinki.fi/u/lmsalmel/coral/${P}.tar.gz"
 
 LICENSE="GPL-3"
 SLOT="0"

[gentoo-commits] proj/sci:master commit in: sci-biology/coral/

[Andrew Ammerlaan]

commit:     fd9bff6056665520897598bc8f91f956c595cae8
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 10:36:07 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 10:36:07 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=fd9bff60

sci-biology/coral: EAPI bump, vers bump, fix build

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/coral/{coral-1.4.ebuild => coral-1.4.1.ebuild} | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-biology/coral/coral-1.4.ebuild b/sci-biology/coral/coral-1.4.1.ebuild
similarity index 93%
rename from sci-biology/coral/coral-1.4.ebuild
rename to sci-biology/coral/coral-1.4.1.ebuild
index beb33f987..bfa2fc85a 100644
--- a/sci-biology/coral/coral-1.4.ebuild
+++ b/sci-biology/coral/coral-1.4.1.ebuild
@@ -1,9 +1,9 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
-inherit eutils
+inherit toolchain-funcs
 
 DESCRIPTION="Error corrector for Illumina and Roche/454 reads using multiple alignment info"
 HOMEPAGE="http://www.cs.helsinki.fi/u/lmsalmel/coral"
@@ -12,12 +12,12 @@ SRC_URI="http://www.cs.helsinki.fi/u/lmsalmel/coral/${P}.tar.gz"
 LICENSE="GPL-3"
 SLOT="0"
 KEYWORDS="~amd64"
-IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}"
 
 src_prepare(){
+	default
 	sed -e "s#-O3 -Wall -g#${CXXFLAGS}#; s#g++#$(tc-getCXX)#" -i Makefile || die
 }
 

[gentoo-commits] proj/sci:master commit in: sci-biology/coral/

[Horea Christian]

commit:     d1f330256f4f4d50a7446608c9b866930ad0d11c
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Mar  3 19:44:24 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Mar  3 19:44:31 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d1f33025

sci-biology/coral: HTTPS for HOMEPAGE, SRC_URI

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/coral/coral-1.4.1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/coral/coral-1.4.1.ebuild b/sci-biology/coral/coral-1.4.1.ebuild
index bfa2fc85a..0481e5e80 100644
--- a/sci-biology/coral/coral-1.4.1.ebuild
+++ b/sci-biology/coral/coral-1.4.1.ebuild
@@ -6,8 +6,8 @@ EAPI=7
 inherit toolchain-funcs
 
 DESCRIPTION="Error corrector for Illumina and Roche/454 reads using multiple alignment info"
-HOMEPAGE="http://www.cs.helsinki.fi/u/lmsalmel/coral"
-SRC_URI="http://www.cs.helsinki.fi/u/lmsalmel/coral/${P}.tar.gz"
+HOMEPAGE="https://www.cs.helsinki.fi/u/lmsalmel/coral"
+SRC_URI="https://www.cs.helsinki.fi/u/lmsalmel/coral/${P}.tar.gz"
 
 LICENSE="GPL-3"
 SLOT="0"