[gentoo-commits] proj/sci:master commit in: sci-biology/cdbfasta/

[gentoo-commits] proj/sci:master commit in: sci-biology/cdbfasta/

[Justin Lecher]

commit:     93d686395d6a556c97581052653842280e0b6165
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 19:44:11 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 19:44:11 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=93d68639

sci-biology/cdbfasta: Bump EAPI to 5

Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/cdbfasta/cdbfasta-0.1.ebuild | 24 +++++++++---------------
 1 file changed, 9 insertions(+), 15 deletions(-)

diff --git a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
index 05313b2..06cc243 100644
--- a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
+++ b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=3
+EAPI=5
 
-DESCRIPTION="A FASTA record indexing/retrievieng utility, a part of TIGR Gene Indices project tools"
+DESCRIPTION="FASTA record indexing/retrievieng utility, a part of TIGR Gene Indices project tools"
 HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software"
 SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/cdbfasta/cdbfasta.tar.gz"
 
@@ -13,23 +13,17 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
 
-DEPEND=""
-RDEPEND="${DEPEND}"
-
 S=${WORKDIR}/${PN}
 
-src_unpack() {
-	unpack cdbfasta.tar.gz
-}
-
-src_compile() {
-	sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' "${S}"/Makefile || die "Failed to patch Makefile"
+src_prepare() {
+	sed \
+		-e 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' \
+		-i "${S}"/Makefile || die "Failed to patch Makefile"
 	sed -i 's/-march=i686//' "${S}"/Makefile || die
 	sed -i 's/-O2 //' "${S}"/Makefile || die
-	emake || die "emake failed"
 }
 
 src_install() {
-	dobin {cdbfasta,cdbyank} || die "Failed to install binaries"
-	newdoc README README.${PN} || die
+	dobin {cdbfasta,cdbyank}
+	newdoc README README.${PN}
 }

[gentoo-commits] proj/sci:master commit in: sci-biology/cdbfasta/

[Andrew Ammerlaan]

commit:     1874ff6b01de669073c8748514bbe897aac85a9e
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 16:16:46 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 16:16:46 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1874ff6b

sci-biology/cdbfasta: properly name tarball

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/cdbfasta/cdbfasta-0.1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
index f0f8918fa..532011df4 100644
--- a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
+++ b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
 
 DESCRIPTION="FASTA record indexing/retrievieng utility"
 HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software"
-SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/cdbfasta/cdbfasta.tar.gz"
+SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/cdbfasta/cdbfasta.tar.gz -> ${P}.tar.gz"
 
 LICENSE="Artistic"
 SLOT="0"

[gentoo-commits] proj/sci:master commit in: sci-biology/cdbfasta/

[Andrew Ammerlaan]

commit:     1e582e7bab018be9130e0009e0f40516fd5060e4
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Jan 20 08:43:04 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Jan 20 08:43:04 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1e582e7b

sci-biology/cdbfasta: update homepage

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/cdbfasta/cdbfasta-0.1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
index 532011df4..ca1ea2871 100644
--- a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
+++ b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
@@ -4,7 +4,7 @@
 EAPI=5
 
 DESCRIPTION="FASTA record indexing/retrievieng utility"
-HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software"
+HOMEPAGE="https://github.com/gpertea/cdbfasta"
 SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/cdbfasta/cdbfasta.tar.gz -> ${P}.tar.gz"
 
 LICENSE="Artistic"

[gentoo-commits] proj/sci:master commit in: sci-biology/cdbfasta/

[Andrew Ammerlaan]

commit:     8436a89dcf0d52b9a8973b45c46e673377144c69
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 10:11:48 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 10:11:48 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8436a89d

sci-biology/cdbfasta: EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/cdbfasta/cdbfasta-0.1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
index ca1ea2871..c04ce4698 100644
--- a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
+++ b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild
@@ -1,7 +1,7 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 DESCRIPTION="FASTA record indexing/retrievieng utility"
 HOMEPAGE="https://github.com/gpertea/cdbfasta"
@@ -10,11 +10,11 @@ SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/cdbfasta/cdbfasta.ta
 LICENSE="Artistic"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE=""
 
 S=${WORKDIR}/${PN}
 
 src_prepare() {
+	default
 	sed \
 		-e 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' \
 		-i "${S}"/Makefile || die "Failed to patch Makefile"